Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 HLA-L-209ENST00000420110 1011 ntBASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 AC104390.1-201ENST00000555663 520 ntBASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 MIR3180-4-201ENST00000582223 153 ntBASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USH1CQ9Y6N9 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 AC116562.2-201ENST00000507042 360 ntBASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 AC005915.1-201ENST00000624912 2018 ntBASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 PCDHB17P-201ENST00000539533 2393 ntBASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USH1CQ9Y6N9 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.49■□□□□ 0.39
USH1CQ9Y6N9 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms