Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.59■□□□□ 0.41
TTC28Q96AY4 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TTC28Q96AY4 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TTC28Q96AY4 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TTC28Q96AY4 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TTC28Q96AY4 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
TTC28Q96AY4 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TTC28Q96AY4 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
TTC28Q96AY4 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TTC28Q96AY4 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TTC28Q96AY4 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TTC28Q96AY4 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TTC28Q96AY4 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TTC28Q96AY4 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.59■□□□□ 0.41
TTC28Q96AY4 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC17.59■□□□□ 0.41
TTC28Q96AY4 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TTC28Q96AY4 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TTC28Q96AY4 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TTC28Q96AY4 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TTC28Q96AY4 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TTC28Q96AY4 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TTC28Q96AY4 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TTC28Q96AY4 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.58■□□□□ 0.41
TTC28Q96AY4 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.58■□□□□ 0.41
TTC28Q96AY4 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.58■□□□□ 0.41
TTC28Q96AY4 FADS2-212ENST00000522639 360 ntTSL 5 BASIC17.58■□□□□ 0.41
TTC28Q96AY4 FADS2-215ENST00000574708 385 ntTSL 3 BASIC17.58■□□□□ 0.41
TTC28Q96AY4 AC244093.1-201ENST00000610837 814 ntBASIC17.58■□□□□ 0.41
TTC28Q96AY4 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.58■□□□□ 0.41
TTC28Q96AY4 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TTC28Q96AY4 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC17.58■□□□□ 0.4
TTC28Q96AY4 SPDYE19P-201ENST00000338590 713 ntBASIC17.58■□□□□ 0.4
TTC28Q96AY4 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
TTC28Q96AY4 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC17.58■□□□□ 0.4
TTC28Q96AY4 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC17.58■□□□□ 0.4
TTC28Q96AY4 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.4
TTC28Q96AY4 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TTC28Q96AY4 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TTC28Q96AY4 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC17.58■□□□□ 0.4
TTC28Q96AY4 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC17.57■□□□□ 0.4
TTC28Q96AY4 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TTC28Q96AY4 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TTC28Q96AY4 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC17.57■□□□□ 0.4
TTC28Q96AY4 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC17.57■□□□□ 0.4
TTC28Q96AY4 LDHBP1-201ENST00000455730 1119 ntBASIC17.57■□□□□ 0.4
TTC28Q96AY4 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TTC28Q96AY4 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC17.57■□□□□ 0.4
TTC28Q96AY4 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC17.57■□□□□ 0.4
TTC28Q96AY4 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.57■□□□□ 0.4
TTC28Q96AY4 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.57■□□□□ 0.4
TTC28Q96AY4 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TTC28Q96AY4 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TTC28Q96AY4 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TTC28Q96AY4 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
TTC28Q96AY4 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC17.57■□□□□ 0.4
TTC28Q96AY4 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TTC28Q96AY4 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
TTC28Q96AY4 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.57■□□□□ 0.4
TTC28Q96AY4 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
TTC28Q96AY4 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.57■□□□□ 0.4
TTC28Q96AY4 STK25P1-201ENST00000585406 838 ntBASIC17.57■□□□□ 0.4
TTC28Q96AY4 AC007967.4-201ENST00000614700 386 ntBASIC17.57■□□□□ 0.4
TTC28Q96AY4 AL161645.1-201ENST00000622716 1255 ntBASIC17.57■□□□□ 0.4
TTC28Q96AY4 AC008267.7-201ENST00000624570 1194 ntBASIC17.57■□□□□ 0.4
TTC28Q96AY4 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TTC28Q96AY4 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TTC28Q96AY4 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.57■□□□□ 0.4
TTC28Q96AY4 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TTC28Q96AY4 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.56■□□□□ 0.4
TTC28Q96AY4 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
TTC28Q96AY4 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TTC28Q96AY4 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
TTC28Q96AY4 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TTC28Q96AY4 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
TTC28Q96AY4 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TTC28Q96AY4 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TTC28Q96AY4 MIR1247-201ENST00000408206 136 ntBASIC17.56■□□□□ 0.4
TTC28Q96AY4 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TTC28Q96AY4 AC253536.4-201ENST00000440539 267 ntBASIC17.56■□□□□ 0.4
TTC28Q96AY4 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC17.56■□□□□ 0.4
TTC28Q96AY4 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.56■□□□□ 0.4
TTC28Q96AY4 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC17.56■□□□□ 0.4
TTC28Q96AY4 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.56■□□□□ 0.4
TTC28Q96AY4 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.56■□□□□ 0.4
TTC28Q96AY4 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TTC28Q96AY4 MYLKP1-201ENST00000509077 1580 ntBASIC17.56■□□□□ 0.4
TTC28Q96AY4 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TTC28Q96AY4 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.56■□□□□ 0.4
TTC28Q96AY4 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TTC28Q96AY4 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TTC28Q96AY4 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
TTC28Q96AY4 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.56■□□□□ 0.4
TTC28Q96AY4 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.56■□□□□ 0.4
TTC28Q96AY4 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.56■□□□□ 0.4
TTC28Q96AY4 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TTC28Q96AY4 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TTC28Q96AY4 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TTC28Q96AY4 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.55■□□□□ 0.4
TTC28Q96AY4 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TTC28Q96AY4 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms