Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.45■□□□□ 0.7
HPS3Q969F9 TK1-204ENST00000590430 683 ntTSL 3 BASIC19.45■□□□□ 0.7
HPS3Q969F9 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.45■□□□□ 0.7
HPS3Q969F9 AC092329.2-201ENST00000598402 547 ntBASIC19.45■□□□□ 0.7
HPS3Q969F9 Z69720.1-201ENST00000601483 472 ntBASIC19.45■□□□□ 0.7
HPS3Q969F9 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.45■□□□□ 0.7
HPS3Q969F9 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HPS3Q969F9 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC19.45■□□□□ 0.7
HPS3Q969F9 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC19.45■□□□□ 0.7
HPS3Q969F9 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19.45■□□□□ 0.7
HPS3Q969F9 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HPS3Q969F9 AC138932.1-201ENST00000534164 6830 ntBASIC19.45■□□□□ 0.7
HPS3Q969F9 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HPS3Q969F9 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC19.45■□□□□ 0.7
HPS3Q969F9 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HPS3Q969F9 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HPS3Q969F9 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
HPS3Q969F9 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HPS3Q969F9 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC19.44■□□□□ 0.7
HPS3Q969F9 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HPS3Q969F9 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HPS3Q969F9 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.44■□□□□ 0.7
HPS3Q969F9 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HPS3Q969F9 AC011467.2-201ENST00000598425 242 ntBASIC19.44■□□□□ 0.7
HPS3Q969F9 AL139327.4-201ENST00000612362 153 ntBASIC19.44■□□□□ 0.7
HPS3Q969F9 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.44■□□□□ 0.7
HPS3Q969F9 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HPS3Q969F9 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HPS3Q969F9 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HPS3Q969F9 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HPS3Q969F9 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HPS3Q969F9 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HPS3Q969F9 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC19.44■□□□□ 0.7
HPS3Q969F9 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.44■□□□□ 0.7
HPS3Q969F9 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
HPS3Q969F9 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HPS3Q969F9 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HPS3Q969F9 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HPS3Q969F9 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.43■□□□□ 0.7
HPS3Q969F9 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HPS3Q969F9 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HPS3Q969F9 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HPS3Q969F9 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
HPS3Q969F9 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
HPS3Q969F9 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HPS3Q969F9 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
HPS3Q969F9 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HPS3Q969F9 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HPS3Q969F9 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HPS3Q969F9 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HPS3Q969F9 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HPS3Q969F9 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
HPS3Q969F9 FAM220CP-201ENST00000395253 831 ntBASIC19.43■□□□□ 0.7
HPS3Q969F9 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HPS3Q969F9 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.43■□□□□ 0.7
HPS3Q969F9 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.43■□□□□ 0.7
HPS3Q969F9 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.43■□□□□ 0.7
HPS3Q969F9 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.43■□□□□ 0.7
HPS3Q969F9 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HPS3Q969F9 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HPS3Q969F9 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
HPS3Q969F9 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC19.43■□□□□ 0.7
HPS3Q969F9 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HPS3Q969F9 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HPS3Q969F9 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HPS3Q969F9 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.43■□□□□ 0.7
HPS3Q969F9 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
HPS3Q969F9 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.42■□□□□ 0.7
HPS3Q969F9 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HPS3Q969F9 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HPS3Q969F9 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HPS3Q969F9 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HPS3Q969F9 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HPS3Q969F9 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HPS3Q969F9 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
HPS3Q969F9 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HPS3Q969F9 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HPS3Q969F9 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
HPS3Q969F9 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
HPS3Q969F9 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HPS3Q969F9 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.42■□□□□ 0.7
HPS3Q969F9 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HPS3Q969F9 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.42■□□□□ 0.7
HPS3Q969F9 AC002558.1-201ENST00000488906 803 ntBASIC19.42■□□□□ 0.7
HPS3Q969F9 AC122714.2-201ENST00000502787 707 ntBASIC19.42■□□□□ 0.7
HPS3Q969F9 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.42■□□□□ 0.7
HPS3Q969F9 AC009533.2-201ENST00000543664 586 ntBASIC19.42■□□□□ 0.7
HPS3Q969F9 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HPS3Q969F9 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.42■□□□□ 0.7
HPS3Q969F9 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HPS3Q969F9 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.42■□□□□ 0.7
HPS3Q969F9 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HPS3Q969F9 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.42■□□□□ 0.7
HPS3Q969F9 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HPS3Q969F9 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HPS3Q969F9 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
HPS3Q969F9 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC19.41■□□□□ 0.7
HPS3Q969F9 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.41■□□□□ 0.7
HPS3Q969F9 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HPS3Q969F9 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms