Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 AC010460.3-201ENST00000511359 1579 ntBASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 AC116353.5-201ENST00000638148 1699 ntBASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 TSPY5P-201ENST00000426936 936 ntBASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 AC112907.2-201ENST00000448639 330 ntBASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18.2■□□□□ 0.5
ATG4AQ8WYN0 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 AGGF1P2-201ENST00000426656 2106 ntBASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 SPDYE13P-201ENST00000445314 798 ntBASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 AC016396.2-201ENST00000562575 1417 ntBASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 AL139327.4-201ENST00000612362 153 ntBASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 Z83836.1-201ENST00000624605 1642 ntBASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.19■□□□□ 0.5
ATG4AQ8WYN0 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 RNF152P1-201ENST00000397754 604 ntBASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 AC096633.1-201ENST00000422446 749 ntBASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 AC046185.3-201ENST00000623228 1824 ntBASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC18.18■□□□□ 0.5
ATG4AQ8WYN0 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms