Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHROOM3Q8TF72 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.86■□□□□ 0.45
SHROOM3Q8TF72 KRT18P31-201ENST00000506277 1292 ntBASIC17.86■□□□□ 0.45
SHROOM3Q8TF72 FOSL1P1-201ENST00000511041 816 ntBASIC17.86■□□□□ 0.45
SHROOM3Q8TF72 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.86■□□□□ 0.45
SHROOM3Q8TF72 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.86■□□□□ 0.45
SHROOM3Q8TF72 AD001527.2-201ENST00000622994 785 ntBASIC17.86■□□□□ 0.45
SHROOM3Q8TF72 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHROOM3Q8TF72 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
SHROOM3Q8TF72 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 AC092865.5-201ENST00000545435 363 ntBASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 SIGLEC16-201ENST00000599858 1437 ntBASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 PMPCAP1-201ENST00000508114 1576 ntBASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM3Q8TF72 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 AC079776.4-201ENST00000511039 504 ntBASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 BX640515.1-201ENST00000617215 977 ntBASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 NUS1P1-201ENST00000446295 882 ntBASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
SHROOM3Q8TF72 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
SHROOM3Q8TF72 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SHROOM3Q8TF72 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
SHROOM3Q8TF72 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SHROOM3Q8TF72 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SHROOM3Q8TF72 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 REXO1L6P-202ENST00000619970 1078 ntBASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 AL049757.1-201ENST00000616842 1596 ntBASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.44
SHROOM3Q8TF72 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 FAM220CP-201ENST00000395253 831 ntBASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 RCN1P2-201ENST00000398357 915 ntBASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms