Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 NKAPP1-205ENST00000585790 367 ntBASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 CYGB-205ENST00000590175 830 ntTSL 3 BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 AC116407.2-201ENST00000613639 860 ntBASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 AC073592.5-201ENST00000624854 528 ntBASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
NKX2-3Q8TAU0 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 CSF3-203ENST00000394148 622 ntTSL 3 BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 BX005266.1-201ENST00000473402 457 ntBASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 AC034105.1-201ENST00000563488 319 ntBASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 FUT8-AS1-201ENST00000621019 1521 ntBASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 LYSMD4-203ENST00000378904 2122 ntBASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC20.71■□□□□ 0.91
NKX2-3Q8TAU0 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC20.7■□□□□ 0.91
NKX2-3Q8TAU0 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 CD9-202ENST00000382515 1229 ntTSL 5 BASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 COA5-202ENST00000409997 557 ntTSL 4 BASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 CYB561-217ENST00000582997 877 ntTSL 5 BASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 STK25P1-201ENST00000585406 838 ntBASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 HLA-J-201ENST00000462773 1622 ntBASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX2-3Q8TAU0 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NKX2-3Q8TAU0 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NKX2-3Q8TAU0 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.69■□□□□ 0.9
NKX2-3Q8TAU0 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.69■□□□□ 0.9
NKX2-3Q8TAU0 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.69■□□□□ 0.9
NKX2-3Q8TAU0 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NKX2-3Q8TAU0 GNAS-203ENST00000306120 1878 ntBASIC20.69■□□□□ 0.9
NKX2-3Q8TAU0 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
NKX2-3Q8TAU0 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
NKX2-3Q8TAU0 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
NKX2-3Q8TAU0 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NKX2-3Q8TAU0 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NKX2-3Q8TAU0 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
NKX2-3Q8TAU0 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NKX2-3Q8TAU0 PMP22-202ENST00000395936 816 ntTSL 3 BASIC20.69■□□□□ 0.9
NKX2-3Q8TAU0 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC20.69■□□□□ 0.9
NKX2-3Q8TAU0 LBH-203ENST00000404397 543 ntTSL 4 BASIC20.69■□□□□ 0.9
NKX2-3Q8TAU0 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms