Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 ACA64.2-201ENST00000459014 129 ntBASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 AC138969.3-201ENST00000546612 1459 ntBASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 AC138932.2-201ENST00000548268 1459 ntBASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 AC126755.4-201ENST00000549796 1459 ntBASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 UXT-AS1-201ENST00000590504 1525 ntBASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 AC132938.6-201ENST00000623828 1655 ntBASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
SMC1BQ8NDV3 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 GALT-202ENST00000450095 1280 ntTSL 2 BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 KRT8P23-201ENST00000560090 1207 ntBASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 AL162274.1-201ENST00000617191 1098 ntBASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 GPER1-207ENST00000619052 571 ntTSL 2 BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 AL133338.1-201ENST00000565695 1517 ntBASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMC1BQ8NDV3 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 AC018445.3-201ENST00000624177 1945 ntBASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 AC098614.1-201ENST00000368528 745 ntBASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 STK19B-204ENST00000512515 211 ntBASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 CDK4-206ENST00000549606 558 ntTSL 2 BASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMC1BQ8NDV3 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
SMC1BQ8NDV3 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SMC1BQ8NDV3 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.64■□□□□ 0.9
SMC1BQ8NDV3 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
SMC1BQ8NDV3 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SMC1BQ8NDV3 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SMC1BQ8NDV3 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 PGF-202ENST00000405431 666 ntTSL 5 BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 ARL16-202ENST00000570561 768 ntTSL 2 BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMC1BQ8NDV3 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms