Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 AL591424.1-201ENST00000442569 1213 ntBASIC19.04■□□□□ 0.64
VPS52Q8N1B4 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 AC092183.1-201ENST00000469884 875 ntBASIC19.04■□□□□ 0.64
VPS52Q8N1B4 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 AC105339.3-201ENST00000560043 636 ntBASIC19.04■□□□□ 0.64
VPS52Q8N1B4 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS52Q8N1B4 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 AC097374.2-201ENST00000618617 1306 ntBASIC19.03■□□□□ 0.64
VPS52Q8N1B4 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 AP000997.3-201ENST00000623333 2250 ntBASIC19.03■□□□□ 0.64
VPS52Q8N1B4 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 AC005104.2-201ENST00000427818 678 ntBASIC19.03■□□□□ 0.64
VPS52Q8N1B4 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 AP002414.3-201ENST00000589352 1468 ntBASIC19.03■□□□□ 0.64
VPS52Q8N1B4 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19.03■□□□□ 0.64
VPS52Q8N1B4 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 KRT18P3-201ENST00000451602 1288 ntBASIC19.02■□□□□ 0.64
VPS52Q8N1B4 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
VPS52Q8N1B4 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.63
VPS52Q8N1B4 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
VPS52Q8N1B4 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.02■□□□□ 0.63
VPS52Q8N1B4 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
VPS52Q8N1B4 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms