Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXA1P49639 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.62□□□□□ -0.07
HOXA1P49639 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXA1P49639 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXA1P49639 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXA1P49639 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXA1P49639 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC14.62□□□□□ -0.07
HOXA1P49639 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HOXA1P49639 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXA1P49639 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXA1P49639 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
HOXA1P49639 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.62□□□□□ -0.07
HOXA1P49639 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HOXA1P49639 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.62□□□□□ -0.07
HOXA1P49639 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXA1P49639 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXA1P49639 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HOXA1P49639 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HOXA1P49639 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXA1P49639 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXA1P49639 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC14.62□□□□□ -0.07
HOXA1P49639 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXA1P49639 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 AL163051.1-201ENST00000569214 1512 ntBASIC14.61□□□□□ -0.07
HOXA1P49639 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
HOXA1P49639 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
HOXA1P49639 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC14.61□□□□□ -0.07
HOXA1P49639 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC14.61□□□□□ -0.07
HOXA1P49639 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXA1P49639 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
HOXA1P49639 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXA1P49639 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXA1P49639 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
HOXA1P49639 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 NME9-203ENST00000383180 2133 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXA1P49639 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
HOXA1P49639 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC14.61□□□□□ -0.07
HOXA1P49639 SAPCD2P4-201ENST00000424595 1171 ntBASIC14.61□□□□□ -0.07
HOXA1P49639 AC097488.1-201ENST00000507834 756 ntBASIC14.61□□□□□ -0.07
HOXA1P49639 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC14.61□□□□□ -0.07
HOXA1P49639 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXA1P49639 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXA1P49639 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
HOXA1P49639 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC14.61□□□□□ -0.07
HOXA1P49639 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 SRI-203ENST00000419179 1307 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXA1P49639 PP12613-201ENST00000424958 2230 ntBASIC14.61□□□□□ -0.07
HOXA1P49639 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
HOXA1P49639 CYP51A1P1-201ENST00000492267 1507 ntBASIC14.61□□□□□ -0.07
HOXA1P49639 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
HOXA1P49639 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXA1P49639 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXA1P49639 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
HOXA1P49639 UROS-202ENST00000368778 1556 ntTSL 2 BASIC14.6□□□□□ -0.07
HOXA1P49639 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HOXA1P49639 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXA1P49639 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
HOXA1P49639 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC14.6□□□□□ -0.07
HOXA1P49639 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXA1P49639 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXA1P49639 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
HOXA1P49639 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXA1P49639 SDHAP2-201ENST00000455183 2001 ntBASIC14.6□□□□□ -0.07
HOXA1P49639 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HOXA1P49639 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXA1P49639 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
HOXA1P49639 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC14.6□□□□□ -0.07
HOXA1P49639 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXA1P49639 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC14.6□□□□□ -0.07
HOXA1P49639 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC14.6□□□□□ -0.07
HOXA1P49639 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC14.6□□□□□ -0.07
HOXA1P49639 AC009065.1-201ENST00000564055 1225 ntBASIC14.6□□□□□ -0.07
HOXA1P49639 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC14.6□□□□□ -0.07
HOXA1P49639 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC14.6□□□□□ -0.07
HOXA1P49639 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms