Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.84■□□□□ 0.29
SEMA3DO95025 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SEMA3DO95025 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
SEMA3DO95025 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SEMA3DO95025 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SEMA3DO95025 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SEMA3DO95025 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SEMA3DO95025 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SEMA3DO95025 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SEMA3DO95025 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SEMA3DO95025 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SEMA3DO95025 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
SEMA3DO95025 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SEMA3DO95025 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SEMA3DO95025 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SEMA3DO95025 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SEMA3DO95025 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.84■□□□□ 0.29
SEMA3DO95025 AC007967.3-201ENST00000434308 558 ntBASIC16.84■□□□□ 0.29
SEMA3DO95025 TSSC2-201ENST00000450217 709 ntBASIC16.84■□□□□ 0.29
SEMA3DO95025 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.84■□□□□ 0.29
SEMA3DO95025 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.84■□□□□ 0.29
SEMA3DO95025 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.84■□□□□ 0.29
SEMA3DO95025 AC005336.2-201ENST00000593183 939 ntBASIC16.84■□□□□ 0.29
SEMA3DO95025 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
SEMA3DO95025 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.84■□□□□ 0.29
SEMA3DO95025 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
SEMA3DO95025 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SEMA3DO95025 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.84■□□□□ 0.29
SEMA3DO95025 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SEMA3DO95025 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SEMA3DO95025 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.84■□□□□ 0.29
SEMA3DO95025 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SEMA3DO95025 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.84■□□□□ 0.29
SEMA3DO95025 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SEMA3DO95025 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SEMA3DO95025 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
SEMA3DO95025 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SEMA3DO95025 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
SEMA3DO95025 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SEMA3DO95025 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SEMA3DO95025 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SEMA3DO95025 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SEMA3DO95025 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SEMA3DO95025 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SEMA3DO95025 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SEMA3DO95025 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SEMA3DO95025 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SEMA3DO95025 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.83■□□□□ 0.28
SEMA3DO95025 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.83■□□□□ 0.28
SEMA3DO95025 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.83■□□□□ 0.28
SEMA3DO95025 AC122714.2-201ENST00000502787 707 ntBASIC16.83■□□□□ 0.28
SEMA3DO95025 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.83■□□□□ 0.28
SEMA3DO95025 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
SEMA3DO95025 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.83■□□□□ 0.28
SEMA3DO95025 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SEMA3DO95025 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.83■□□□□ 0.28
SEMA3DO95025 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.83■□□□□ 0.28
SEMA3DO95025 AP000550.4-202ENST00000639755 178 ntBASIC16.83■□□□□ 0.28
SEMA3DO95025 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SEMA3DO95025 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SEMA3DO95025 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
SEMA3DO95025 AC008894.3-201ENST00000624324 3103 ntBASIC16.83■□□□□ 0.28
SEMA3DO95025 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SEMA3DO95025 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SEMA3DO95025 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SEMA3DO95025 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.82■□□□□ 0.28
SEMA3DO95025 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
SEMA3DO95025 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SEMA3DO95025 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SEMA3DO95025 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SEMA3DO95025 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SEMA3DO95025 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SEMA3DO95025 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SEMA3DO95025 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SEMA3DO95025 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
SEMA3DO95025 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.82■□□□□ 0.28
SEMA3DO95025 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
SEMA3DO95025 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SEMA3DO95025 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.82■□□□□ 0.28
SEMA3DO95025 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SEMA3DO95025 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SEMA3DO95025 DRAXINP1-201ENST00000437611 948 ntBASIC16.82■□□□□ 0.28
SEMA3DO95025 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.82■□□□□ 0.28
SEMA3DO95025 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.82■□□□□ 0.28
SEMA3DO95025 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.82■□□□□ 0.28
SEMA3DO95025 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SEMA3DO95025 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
SEMA3DO95025 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SEMA3DO95025 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SEMA3DO95025 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.82■□□□□ 0.28
SEMA3DO95025 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.82■□□□□ 0.28
SEMA3DO95025 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SEMA3DO95025 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SEMA3DO95025 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SEMA3DO95025 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.81■□□□□ 0.28
SEMA3DO95025 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SEMA3DO95025 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
SEMA3DO95025 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.81■□□□□ 0.28
SEMA3DO95025 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SEMA3DO95025 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms