Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 MIR346-201ENST00000362234 95 ntBASIC13.44□□□□□ -0.26
COL6A5A8TX70 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 AL355994.2-201ENST00000447882 704 ntBASIC13.44□□□□□ -0.26
COL6A5A8TX70 HLA-V-204ENST00000476601 1289 ntBASIC13.44□□□□□ -0.26
COL6A5A8TX70 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 ORC6-206ENST00000568364 888 ntTSL 5 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 AC007952.6-201ENST00000573168 2673 ntBASIC13.44□□□□□ -0.26
COL6A5A8TX70 AC003957.1-201ENST00000625108 2673 ntBASIC13.44□□□□□ -0.26
COL6A5A8TX70 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 AL049812.1-201ENST00000432563 2267 ntBASIC13.44□□□□□ -0.26
COL6A5A8TX70 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 MFF-223ENST00000524634 647 ntTSL 2 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
COL6A5A8TX70 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A5A8TX70 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 BNIP3P42-201ENST00000454982 569 ntBASIC13.43□□□□□ -0.26
COL6A5A8TX70 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 BNIP3P29-201ENST00000598302 571 ntBASIC13.43□□□□□ -0.26
COL6A5A8TX70 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC13.43□□□□□ -0.26
COL6A5A8TX70 AC011447.5-201ENST00000616168 564 ntBASIC13.43□□□□□ -0.26
COL6A5A8TX70 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A5A8TX70 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC13.43□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms