Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 HNRNPRP1-201ENST00000453465 1695 ntBASIC30.1■■■□□ 2.41
CCDC88BA6NC98 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC88BA6NC98 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC30.09■■■□□ 2.41
CCDC88BA6NC98 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC88BA6NC98 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC88BA6NC98 SPDYE11-202ENST00000450699 704 ntBASIC30.09■■■□□ 2.41
CCDC88BA6NC98 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC88BA6NC98 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC30.09■■■□□ 2.41
CCDC88BA6NC98 SPDYE9P-201ENST00000570642 692 ntBASIC30.09■■■□□ 2.41
CCDC88BA6NC98 SPDYE10P-202ENST00000612005 668 ntBASIC30.09■■■□□ 2.41
CCDC88BA6NC98 SPDYE8P-202ENST00000612377 668 ntBASIC30.09■■■□□ 2.41
CCDC88BA6NC98 AL645728.2-201ENST00000641974 660 ntBASIC30.09■■■□□ 2.41
CCDC88BA6NC98 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC88BA6NC98 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC88BA6NC98 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC30.09■■■□□ 2.41
CCDC88BA6NC98 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC88BA6NC98 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC30.09■■■□□ 2.41
CCDC88BA6NC98 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC30.09■■■□□ 2.41
CCDC88BA6NC98 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC88BA6NC98 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC30.09■■■□□ 2.41
CCDC88BA6NC98 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
CCDC88BA6NC98 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 MNT-208ENST00000575394 606 ntTSL 4 BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 MIR4745-201ENST00000577608 62 ntBASIC30.08■■■□□ 2.41
CCDC88BA6NC98 AC239800.4-201ENST00000603712 296 ntBASIC30.08■■■□□ 2.41
CCDC88BA6NC98 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 AL138781.2-201ENST00000617896 1843 ntBASIC30.08■■■□□ 2.41
CCDC88BA6NC98 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
CCDC88BA6NC98 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
CCDC88BA6NC98 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC30.07■■■□□ 2.4
CCDC88BA6NC98 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CCDC88BA6NC98 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CCDC88BA6NC98 AL512356.2-201ENST00000546955 174 ntBASIC30.07■■■□□ 2.4
CCDC88BA6NC98 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC30.07■■■□□ 2.4
CCDC88BA6NC98 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC30.07■■■□□ 2.4
CCDC88BA6NC98 AP001059.3-201ENST00000619053 235 ntBASIC30.07■■■□□ 2.4
CCDC88BA6NC98 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CCDC88BA6NC98 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CCDC88BA6NC98 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CCDC88BA6NC98 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC30.07■■■□□ 2.4
CCDC88BA6NC98 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
CCDC88BA6NC98 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 PNKD-204ENST00000436005 978 ntTSL 5 BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 KRT18P32-201ENST00000424695 1287 ntBASIC30.06■■■□□ 2.4
CCDC88BA6NC98 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 RN7SL589P-201ENST00000481268 310 ntBASIC30.06■■■□□ 2.4
CCDC88BA6NC98 AC067863.1-201ENST00000494933 530 ntBASIC30.06■■■□□ 2.4
CCDC88BA6NC98 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC30.06■■■□□ 2.4
CCDC88BA6NC98 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC88BA6NC98 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC88BA6NC98 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC88BA6NC98 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
CCDC88BA6NC98 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC88BA6NC98 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC88BA6NC98 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC88BA6NC98 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC88BA6NC98 TFAMP1-201ENST00000412727 736 ntBASIC30.05■■■□□ 2.4
CCDC88BA6NC98 AL671277.1-201ENST00000429656 993 ntBASIC30.05■■■□□ 2.4
CCDC88BA6NC98 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC88BA6NC98 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC30.05■■■□□ 2.4
CCDC88BA6NC98 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC30.05■■■□□ 2.4
CCDC88BA6NC98 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
CCDC88BA6NC98 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
CCDC88BA6NC98 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
CCDC88BA6NC98 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC30.04■■■□□ 2.4
CCDC88BA6NC98 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC30.04■■■□□ 2.4
CCDC88BA6NC98 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC30.04■■■□□ 2.4
CCDC88BA6NC98 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC30.04■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms