Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMIM28A0A1B0GU29 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 TERC-201ENST00000602385 541 ntBASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 AL353135.1-201ENST00000606729 504 ntBASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 AC027601.4-201ENST00000611259 610 ntBASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SMIM28A0A1B0GU29 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SMIM28A0A1B0GU29 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.77■□□□□ 0.59
SMIM28A0A1B0GU29 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
SMIM28A0A1B0GU29 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SMIM28A0A1B0GU29 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.77■□□□□ 0.59
SMIM28A0A1B0GU29 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SMIM28A0A1B0GU29 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.77■□□□□ 0.59
SMIM28A0A1B0GU29 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 AC140113.2-201ENST00000604370 208 ntBASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 AL135999.2-201ENST00000622438 1686 ntBASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMIM28A0A1B0GU29 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 FAM197Y3-203ENST00000618346 717 ntBASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 AC023511.2-201ENST00000618803 211 ntBASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms