Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 PMS2P2-201ENST00000425039 1128 ntBASIC20.63■□□□□ 0.89
DDX4Q9NQI0 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 AC096734.2-201ENST00000562054 433 ntBASIC20.63■□□□□ 0.89
DDX4Q9NQI0 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 CYB561-216ENST00000582297 897 ntTSL 3 BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 AQP6-205ENST00000618286 829 ntTSL 5 BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
DDX4Q9NQI0 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 PI4KAP1-204ENST00000612579 1703 ntBASIC20.62■□□□□ 0.89
DDX4Q9NQI0 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 RHOQP3-201ENST00000437982 621 ntBASIC20.62■□□□□ 0.89
DDX4Q9NQI0 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 KRT19P2-202ENST00000557173 1012 ntBASIC20.62■□□□□ 0.89
DDX4Q9NQI0 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 AL596442.2-201ENST00000610240 980 ntBASIC20.62■□□□□ 0.89
DDX4Q9NQI0 GGTLC5P-201ENST00000617623 998 ntBASIC20.62■□□□□ 0.89
DDX4Q9NQI0 C20orf181-201ENST00000623918 480 ntBASIC20.62■□□□□ 0.89
DDX4Q9NQI0 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX4Q9NQI0 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 BCAR1-209ENST00000546196 1340 ntBASIC20.61■□□□□ 0.89
DDX4Q9NQI0 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 HTR5BP-201ENST00000430851 1154 ntBASIC20.61■□□□□ 0.89
DDX4Q9NQI0 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 PDPK2P-202ENST00000562415 1191 ntBASIC20.61■□□□□ 0.89
DDX4Q9NQI0 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
DDX4Q9NQI0 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 CFL1-202ENST00000524553 860 ntTSL 2 BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 TK1-204ENST00000590430 683 ntTSL 3 BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms