Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC16.45■□□□□ 0.22
VCX3AQ9NNX9 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 SPI1-203ENST00000533030 661 ntTSL 2 BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 RCC2P3-201ENST00000418112 1537 ntBASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCX3AQ9NNX9 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 AC110285.6-201ENST00000617652 491 ntBASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 AC006557.6-201ENST00000623071 864 ntBASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCX3AQ9NNX9 AC144831.1-201ENST00000573312 2656 ntBASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCX3AQ9NNX9 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms