Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AC004790.2-201ENST00000623588 572 ntBASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
PAAF1Q9BRP4 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 RPSAP43-201ENST00000402237 625 ntBASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PAAF1Q9BRP4 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 MYCLP1-201ENST00000372451 1075 ntBASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 GPX1P2-201ENST00000429271 606 ntBASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 AC112482.1-201ENST00000492080 688 ntBASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 MIR4751-201ENST00000578027 74 ntBASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.67■□□□□ 0.58
PAAF1Q9BRP4 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 GPR89P-201ENST00000407924 1495 ntBASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 UPF3AP3-201ENST00000420996 769 ntBASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 AC018845.2-201ENST00000568326 409 ntBASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.66■□□□□ 0.58
PAAF1Q9BRP4 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.65■□□□□ 0.58
PAAF1Q9BRP4 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms