Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP48Q86UV5 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.54■■□□□ 1.04
USP48Q86UV5 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP48Q86UV5 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP48Q86UV5 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP48Q86UV5 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC21.54■■□□□ 1.04
USP48Q86UV5 AC093677.2-201ENST00000600169 1863 ntBASIC21.54■■□□□ 1.04
USP48Q86UV5 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC21.53■■□□□ 1.04
USP48Q86UV5 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.53■■□□□ 1.04
USP48Q86UV5 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
USP48Q86UV5 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
USP48Q86UV5 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
USP48Q86UV5 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
USP48Q86UV5 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
USP48Q86UV5 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
USP48Q86UV5 MIR149-201ENST00000384879 89 ntBASIC21.53■■□□□ 1.04
USP48Q86UV5 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
USP48Q86UV5 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
USP48Q86UV5 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC21.53■■□□□ 1.04
USP48Q86UV5 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
USP48Q86UV5 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC21.53■■□□□ 1.04
USP48Q86UV5 AC009154.2-201ENST00000621177 724 ntBASIC21.53■■□□□ 1.04
USP48Q86UV5 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
USP48Q86UV5 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC21.53■■□□□ 1.04
USP48Q86UV5 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
USP48Q86UV5 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
USP48Q86UV5 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC21.53■■□□□ 1.04
USP48Q86UV5 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
USP48Q86UV5 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
USP48Q86UV5 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
USP48Q86UV5 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
USP48Q86UV5 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
USP48Q86UV5 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
USP48Q86UV5 EML3-212ENST00000494176 2901 ntTSL 2 BASIC21.52■■□□□ 1.04
USP48Q86UV5 EML3-216ENST00000529309 2909 ntTSL 2 BASIC21.52■■□□□ 1.04
USP48Q86UV5 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.04
USP48Q86UV5 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP48Q86UV5 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC21.52■■□□□ 1.04
USP48Q86UV5 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP48Q86UV5 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP48Q86UV5 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP48Q86UV5 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC21.52■■□□□ 1.04
USP48Q86UV5 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP48Q86UV5 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC21.52■■□□□ 1.04
USP48Q86UV5 AP006288.1-201ENST00000446065 395 ntBASIC21.52■■□□□ 1.04
USP48Q86UV5 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC21.52■■□□□ 1.04
USP48Q86UV5 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
USP48Q86UV5 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC21.52■■□□□ 1.04
USP48Q86UV5 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC21.52■■□□□ 1.04
USP48Q86UV5 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC21.52■■□□□ 1.04
USP48Q86UV5 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP48Q86UV5 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP48Q86UV5 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP48Q86UV5 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
USP48Q86UV5 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP48Q86UV5 UROS-202ENST00000368778 1556 ntTSL 2 BASIC21.52■■□□□ 1.04
USP48Q86UV5 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
USP48Q86UV5 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
USP48Q86UV5 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
USP48Q86UV5 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
USP48Q86UV5 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
USP48Q86UV5 LINC00896-202ENST00000609602 2128 ntBASIC21.52■■□□□ 1.03
USP48Q86UV5 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
USP48Q86UV5 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC21.51■■□□□ 1.03
USP48Q86UV5 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
USP48Q86UV5 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
USP48Q86UV5 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
USP48Q86UV5 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
USP48Q86UV5 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC21.51■■□□□ 1.03
USP48Q86UV5 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
USP48Q86UV5 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
USP48Q86UV5 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
USP48Q86UV5 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC21.51■■□□□ 1.03
USP48Q86UV5 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC21.51■■□□□ 1.03
USP48Q86UV5 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC21.51■■□□□ 1.03
USP48Q86UV5 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC21.51■■□□□ 1.03
USP48Q86UV5 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC21.51■■□□□ 1.03
USP48Q86UV5 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC21.51■■□□□ 1.03
USP48Q86UV5 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
USP48Q86UV5 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
USP48Q86UV5 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
USP48Q86UV5 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
USP48Q86UV5 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC21.51■■□□□ 1.03
USP48Q86UV5 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
USP48Q86UV5 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
USP48Q86UV5 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
USP48Q86UV5 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
USP48Q86UV5 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC21.5■■□□□ 1.03
USP48Q86UV5 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
USP48Q86UV5 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
USP48Q86UV5 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC21.5■■□□□ 1.03
USP48Q86UV5 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
USP48Q86UV5 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
USP48Q86UV5 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
USP48Q86UV5 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
USP48Q86UV5 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC21.5■■□□□ 1.03
USP48Q86UV5 SOD2-201ENST00000337404 991 ntTSL 2 BASIC21.5■■□□□ 1.03
USP48Q86UV5 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
USP48Q86UV5 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
USP48Q86UV5 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms