Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF4P78317 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.29■□□□□ 0.2
RNF4P78317 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
RNF4P78317 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF4P78317 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF4P78317 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF4P78317 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF4P78317 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF4P78317 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF4P78317 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
RNF4P78317 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
RNF4P78317 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF4P78317 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RNF4P78317 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.28■□□□□ 0.2
RNF4P78317 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF4P78317 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.28■□□□□ 0.2
RNF4P78317 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF4P78317 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RNF4P78317 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.28■□□□□ 0.2
RNF4P78317 AC026396.1-201ENST00000419388 421 ntBASIC16.28■□□□□ 0.2
RNF4P78317 SCARNA2-201ENST00000458748 420 ntBASIC16.28■□□□□ 0.2
RNF4P78317 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RNF4P78317 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.28■□□□□ 0.2
RNF4P78317 LINC01451-201ENST00000623792 534 ntBASIC16.28■□□□□ 0.2
RNF4P78317 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.28■□□□□ 0.2
RNF4P78317 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.28■□□□□ 0.2
RNF4P78317 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF4P78317 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RNF4P78317 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF4P78317 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF4P78317 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNF4P78317 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
RNF4P78317 AC018470.1-201ENST00000624790 3129 ntBASIC16.28■□□□□ 0.2
RNF4P78317 AL356309.3-201ENST00000624132 1934 ntBASIC16.27■□□□□ 0.2
RNF4P78317 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.27■□□□□ 0.2
RNF4P78317 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RNF4P78317 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RNF4P78317 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RNF4P78317 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RNF4P78317 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RNF4P78317 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RNF4P78317 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RNF4P78317 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
RNF4P78317 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RNF4P78317 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.27■□□□□ 0.2
RNF4P78317 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.27■□□□□ 0.2
RNF4P78317 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RNF4P78317 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RNF4P78317 AP002469.2-201ENST00000531724 424 ntBASIC16.27■□□□□ 0.2
RNF4P78317 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.27■□□□□ 0.2
RNF4P78317 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.27■□□□□ 0.2
RNF4P78317 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.27■□□□□ 0.2
RNF4P78317 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.27■□□□□ 0.2
RNF4P78317 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.27■□□□□ 0.2
RNF4P78317 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
RNF4P78317 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RNF4P78317 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
RNF4P78317 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
RNF4P78317 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RNF4P78317 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.27■□□□□ 0.19
RNF4P78317 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.27■□□□□ 0.19
RNF4P78317 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.27■□□□□ 0.19
RNF4P78317 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
RNF4P78317 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
RNF4P78317 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
RNF4P78317 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.19
RNF4P78317 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RNF4P78317 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.27■□□□□ 0.19
RNF4P78317 AC079776.2-201ENST00000641154 1609 ntBASIC16.27■□□□□ 0.19
RNF4P78317 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
RNF4P78317 AC132938.5-201ENST00000624980 1813 ntBASIC16.26■□□□□ 0.19
RNF4P78317 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF4P78317 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF4P78317 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RNF4P78317 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF4P78317 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
RNF4P78317 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
RNF4P78317 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RNF4P78317 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RNF4P78317 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
RNF4P78317 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
RNF4P78317 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF4P78317 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF4P78317 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
RNF4P78317 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
RNF4P78317 MYCLP1-201ENST00000372451 1075 ntBASIC16.26■□□□□ 0.19
RNF4P78317 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.26■□□□□ 0.19
RNF4P78317 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.26■□□□□ 0.19
RNF4P78317 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF4P78317 FAM197Y8-203ENST00000450145 560 ntBASIC16.26■□□□□ 0.19
RNF4P78317 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
RNF4P78317 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF4P78317 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
RNF4P78317 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RNF4P78317 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
RNF4P78317 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.26■□□□□ 0.19
RNF4P78317 AL139288.1-201ENST00000623748 933 ntBASIC16.26■□□□□ 0.19
RNF4P78317 TP73-AS1-207ENST00000624167 988 ntBASIC16.26■□□□□ 0.19
RNF4P78317 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RNF4P78317 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms