Protein–RNA interactions for Protein: P58876

HIST1H2BD, Histone H2B type 1-D, humanhuman

Predictions only

Length 126 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H2BDP58876 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 NFIC-211ENST00000641145 8399 ntBASIC13.24□□□□□ -0.29
HIST1H2BDP58876 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
HIST1H2BDP58876 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 PPP1R26P4-201ENST00000619065 3527 ntBASIC13.23□□□□□ -0.29
HIST1H2BDP58876 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 KRT8P9-201ENST00000558927 1449 ntBASIC13.23□□□□□ -0.29
HIST1H2BDP58876 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 AC012414.1-201ENST00000556676 535 ntBASIC13.23□□□□□ -0.29
HIST1H2BDP58876 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 AC005089.1-201ENST00000619486 2241 ntBASIC13.23□□□□□ -0.29
HIST1H2BDP58876 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.23□□□□□ -0.29
HIST1H2BDP58876 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC13.22□□□□□ -0.29
HIST1H2BDP58876 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms