Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.69■□□□□ 0.26
LIM2P55344 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.69■□□□□ 0.26
LIM2P55344 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.69■□□□□ 0.26
LIM2P55344 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIM2P55344 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
LIM2P55344 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.69■□□□□ 0.26
LIM2P55344 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.69■□□□□ 0.26
LIM2P55344 PRORSD1P-202ENST00000563365 2154 ntBASIC16.69■□□□□ 0.26
LIM2P55344 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
LIM2P55344 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
LIM2P55344 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIM2P55344 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIM2P55344 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIM2P55344 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIM2P55344 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
LIM2P55344 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
LIM2P55344 AC090340.1-201ENST00000620778 4980 ntBASIC16.69■□□□□ 0.26
LIM2P55344 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
LIM2P55344 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
LIM2P55344 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIM2P55344 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIM2P55344 AC133963.1-201ENST00000504166 1679 ntBASIC16.69■□□□□ 0.26
LIM2P55344 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIM2P55344 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.68■□□□□ 0.26
LIM2P55344 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LIM2P55344 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LIM2P55344 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIM2P55344 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LIM2P55344 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LIM2P55344 PCDHA12-202ENST00000613593 2588 ntBASIC16.68■□□□□ 0.26
LIM2P55344 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.68■□□□□ 0.26
LIM2P55344 HLA-J-201ENST00000462773 1622 ntBASIC16.68■□□□□ 0.26
LIM2P55344 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIM2P55344 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
LIM2P55344 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.68■□□□□ 0.26
LIM2P55344 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
LIM2P55344 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.68■□□□□ 0.26
LIM2P55344 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.68■□□□□ 0.26
LIM2P55344 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.68■□□□□ 0.26
LIM2P55344 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.68■□□□□ 0.26
LIM2P55344 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.68■□□□□ 0.26
LIM2P55344 PRELID1P1-202ENST00000567272 903 ntBASIC16.68■□□□□ 0.26
LIM2P55344 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.68■□□□□ 0.26
LIM2P55344 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.68■□□□□ 0.26
LIM2P55344 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIM2P55344 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIM2P55344 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIM2P55344 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.68■□□□□ 0.26
LIM2P55344 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.68■□□□□ 0.26
LIM2P55344 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.68■□□□□ 0.26
LIM2P55344 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIM2P55344 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIM2P55344 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIM2P55344 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIM2P55344 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
LIM2P55344 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 AC009053.2-201ENST00000563701 2365 ntBASIC16.67■□□□□ 0.26
LIM2P55344 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.67■□□□□ 0.26
LIM2P55344 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.67■□□□□ 0.26
LIM2P55344 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 AC103564.2-201ENST00000432853 1299 ntBASIC16.67■□□□□ 0.26
LIM2P55344 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.67■□□□□ 0.26
LIM2P55344 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.67■□□□□ 0.26
LIM2P55344 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.67■□□□□ 0.26
LIM2P55344 MIR5100-201ENST00000579544 119 ntBASIC16.67■□□□□ 0.26
LIM2P55344 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.67■□□□□ 0.26
LIM2P55344 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 CLEC4GP1-201ENST00000596555 870 ntBASIC16.67■□□□□ 0.26
LIM2P55344 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.67■□□□□ 0.26
LIM2P55344 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.67■□□□□ 0.26
LIM2P55344 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
LIM2P55344 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.67■□□□□ 0.26
LIM2P55344 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.67■□□□□ 0.26
LIM2P55344 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.67■□□□□ 0.26
LIM2P55344 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.67■□□□□ 0.26
LIM2P55344 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 AC106820.2-201ENST00000563775 3264 ntBASIC16.67■□□□□ 0.26
LIM2P55344 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.67■□□□□ 0.26
LIM2P55344 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIM2P55344 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
LIM2P55344 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.67■□□□□ 0.26
LIM2P55344 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.67■□□□□ 0.26
LIM2P55344 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
LIM2P55344 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms