Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VIMP08670 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VIMP08670 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
VIMP08670 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.71■□□□□ 0.43
VIMP08670 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
VIMP08670 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
VIMP08670 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VIMP08670 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
VIMP08670 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
VIMP08670 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
VIMP08670 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
VIMP08670 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.71■□□□□ 0.43
VIMP08670 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VIMP08670 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VIMP08670 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VIMP08670 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.71■□□□□ 0.43
VIMP08670 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VIMP08670 FAM207BP-201ENST00000447172 505 ntBASIC17.71■□□□□ 0.43
VIMP08670 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.71■□□□□ 0.43
VIMP08670 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.71■□□□□ 0.43
VIMP08670 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.71■□□□□ 0.43
VIMP08670 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.71■□□□□ 0.43
VIMP08670 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.71■□□□□ 0.43
VIMP08670 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VIMP08670 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
VIMP08670 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
VIMP08670 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
VIMP08670 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.71■□□□□ 0.43
VIMP08670 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
VIMP08670 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
VIMP08670 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
VIMP08670 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VIMP08670 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.71■□□□□ 0.43
VIMP08670 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VIMP08670 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VIMP08670 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.71■□□□□ 0.43
VIMP08670 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC17.71■□□□□ 0.42
VIMP08670 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
VIMP08670 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
VIMP08670 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
VIMP08670 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
VIMP08670 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
VIMP08670 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
VIMP08670 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
VIMP08670 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC17.7■□□□□ 0.42
VIMP08670 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.7■□□□□ 0.42
VIMP08670 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
VIMP08670 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
VIMP08670 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.7■□□□□ 0.42
VIMP08670 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.7■□□□□ 0.42
VIMP08670 MIR3180-5-201ENST00000583743 153 ntBASIC17.7■□□□□ 0.42
VIMP08670 WT1-AS_3.1-201ENST00000613262 234 ntBASIC17.7■□□□□ 0.42
VIMP08670 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.7■□□□□ 0.42
VIMP08670 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.7■□□□□ 0.42
VIMP08670 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.7■□□□□ 0.42
VIMP08670 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
VIMP08670 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
VIMP08670 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.7■□□□□ 0.42
VIMP08670 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.7■□□□□ 0.42
VIMP08670 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.7■□□□□ 0.42
VIMP08670 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.7■□□□□ 0.42
VIMP08670 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
VIMP08670 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 MYB-201ENST00000316528 3571 ntTSL 5 BASIC17.7■□□□□ 0.42
VIMP08670 MYB-241ENST00000616088 3573 ntTSL 5 BASIC17.7■□□□□ 0.42
VIMP08670 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VIMP08670 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.69■□□□□ 0.42
VIMP08670 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
VIMP08670 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.69■□□□□ 0.42
VIMP08670 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
VIMP08670 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.69■□□□□ 0.42
VIMP08670 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.69■□□□□ 0.42
VIMP08670 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms