Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 AL160237.2-201ENST00000556165 472 ntBASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
COL4A3BPQ9Y5P4 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 FDX1P1-201ENST00000449115 551 ntBASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 AC009078.2-202ENST00000463353 338 ntBASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 BX276092.7-203ENST00000637198 1536 ntBASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A3BPQ9Y5P4 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 AP002469.2-201ENST00000531724 424 ntBASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
COL4A3BPQ9Y5P4 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A3BPQ9Y5P4 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.67■□□□□ 0.74
COL4A3BPQ9Y5P4 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A3BPQ9Y5P4 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A3BPQ9Y5P4 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A3BPQ9Y5P4 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC19.67■□□□□ 0.74
COL4A3BPQ9Y5P4 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms