Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 ELK2BP-201ENST00000415014 1224 ntBASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 AC004790.2-201ENST00000623588 572 ntBASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 AL031432.2-201ENST00000566714 459 ntBASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 AL928711.1-201ENST00000570165 459 ntBASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMD1Q9UGP4 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 AC103564.2-201ENST00000432853 1299 ntBASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 PRSS29P-201ENST00000440800 595 ntBASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 LHX6-205ENST00000464484 666 ntTSL 2 BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 AC093028.1-201ENST00000622998 982 ntBASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
LIMD1Q9UGP4 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms