Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 AL353593.2-201ENST00000602529 1483 ntBASIC18.86■□□□□ 0.61
SIX2Q9NPC8 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 IER3-202ENST00000376377 1350 ntBASIC18.86■□□□□ 0.61
SIX2Q9NPC8 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 KRT18P1-202ENST00000452408 1331 ntBASIC18.86■□□□□ 0.61
SIX2Q9NPC8 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 STK25P1-201ENST00000585406 838 ntBASIC18.86■□□□□ 0.61
SIX2Q9NPC8 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SIX2Q9NPC8 AL121761.2-201ENST00000598007 1648 ntBASIC18.85■□□□□ 0.61
SIX2Q9NPC8 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 MYCLP1-201ENST00000372451 1075 ntBASIC18.85■□□□□ 0.61
SIX2Q9NPC8 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 AC103564.2-201ENST00000432853 1299 ntBASIC18.85■□□□□ 0.61
SIX2Q9NPC8 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 IGHV3-52-201ENST00000519770 353 ntBASIC18.85■□□□□ 0.61
SIX2Q9NPC8 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 AC009533.2-201ENST00000543664 586 ntBASIC18.85■□□□□ 0.61
SIX2Q9NPC8 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 AP002414.4-201ENST00000589764 1148 ntBASIC18.85■□□□□ 0.61
SIX2Q9NPC8 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SIX2Q9NPC8 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SIX2Q9NPC8 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SIX2Q9NPC8 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.84■□□□□ 0.61
SIX2Q9NPC8 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SIX2Q9NPC8 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SIX2Q9NPC8 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SIX2Q9NPC8 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SIX2Q9NPC8 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.84■□□□□ 0.61
SIX2Q9NPC8 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms