Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
CHD8Q9HCK8 AC093677.2-201ENST00000600169 1863 ntBASIC16.18■□□□□ 0.18
CHD8Q9HCK8 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.17■□□□□ 0.18
CHD8Q9HCK8 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 AC007389.4-201ENST00000454674 793 ntBASIC16.17■□□□□ 0.18
CHD8Q9HCK8 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHD8Q9HCK8 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 AL157384.1-201ENST00000445995 2473 ntBASIC16.16■□□□□ 0.18
CHD8Q9HCK8 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.16■□□□□ 0.18
CHD8Q9HCK8 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 CHCHD2P3-201ENST00000603038 451 ntBASIC16.16■□□□□ 0.18
CHD8Q9HCK8 AC133552.6-201ENST00000613406 534 ntBASIC16.16■□□□□ 0.18
CHD8Q9HCK8 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CHD8Q9HCK8 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 KRT223P-202ENST00000449164 1292 ntBASIC16.15■□□□□ 0.18
CHD8Q9HCK8 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 AL137060.1-201ENST00000618151 2648 ntBASIC16.15■□□□□ 0.18
CHD8Q9HCK8 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 AL513480.1-201ENST00000451731 511 ntBASIC16.15■□□□□ 0.18
CHD8Q9HCK8 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms