Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 IL4R-202ENST00000395762 3685 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.633e-9■■□□□ 11.8
UPF1Q92900 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.93■□□□□ 0.621e-16■■□□□ 11.8
UPF1Q92900 STK25-225ENST00000478403 1123 ntTSL 522.98■■□□□ 1.277e-8■■□□□ 11.8
UPF1Q92900 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.278e-9■■□□□ 11.8
UPF1Q92900 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC23.88■■□□□ 1.418e-9■■□□□ 11.8
UPF1Q92900 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.328e-9■■□□□ 11.8
UPF1Q92900 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC22.81■■□□□ 1.248e-9■■□□□ 11.8
UPF1Q92900 RBM14-RBM4-202ENST00000421355 2034 ntTSL 219.9■□□□□ 0.788e-9■■□□□ 11.8
UPF1Q92900 YIPF2-210ENST00000591872 430 ntTSL 218.75■□□□□ 0.594e-16■■□□□ 11.8
UPF1Q92900 RBM14-RBM4-204ENST00000511114 523 ntTSL 417.33■□□□□ 0.368e-9■■□□□ 11.8
UPF1Q92900 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.098e-9■■□□□ 11.8
UPF1Q92900 RNF44-204ENST00000506378 848 ntTSL 222.94■■□□□ 1.263e-10■■□□□ 11.8
UPF1Q92900 BORCS7-202ENST00000369883 838 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.336e-25■■□□□ 11.8
UPF1Q92900 BORCS7-201ENST00000339834 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.416e-25■■□□□ 11.8
UPF1Q92900 SERINC1-201ENST00000339697 3137 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.67e-15■■□□□ 11.8
UPF1Q92900 RAB5A-203ENST00000422242 1443 ntTSL 2 BASIC17.55■□□□□ 0.42e-9■■□□□ 11.7
UPF1Q92900 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.661e-6■■□□□ 11.7
UPF1Q92900 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.414e-8■■□□□ 11.7
UPF1Q92900 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.46■□□□□ 0.394e-8■■□□□ 11.7
UPF1Q92900 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.314e-8■■□□□ 11.7
UPF1Q92900 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.593e-6■■□□□ 11.7
UPF1Q92900 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.043e-6■■□□□ 11.7
UPF1Q92900 NIPA1-204ENST00000559448 2799 ntTSL 210.73□□□□□ -0.693e-6■■□□□ 11.7
UPF1Q92900 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC8.27□□□□□ -1.093e-6■■□□□ 11.7
UPF1Q92900 RNF10-203ENST00000413266 2671 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.591e-6■■□□□ 11.7
UPF1Q92900 RNF10-201ENST00000325954 3825 ntTSL 1 (best) BASIC11.22□□□□□ -0.611e-6■■□□□ 11.7
UPF1Q92900 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC13.77□□□□□ -0.22e-7■■□□□ 11.7
UPF1Q92900 MDM2-214ENST00000400501 406 ntTSL 210.87□□□□□ -0.673e-10■■□□□ 11.7
UPF1Q92900 ATP1A1-201ENST00000295598 3654 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.342e-13■■□□□ 11.7
UPF1Q92900 ATP1A1-205ENST00000440951 579 ntTSL 511.9□□□□□ -0.52e-13■■□□□ 11.7
UPF1Q92900 ATP1A1-211ENST00000537345 3763 ntAPPRIS ALT1 TSL 2 BASIC11.65□□□□□ -0.542e-13■■□□□ 11.7
UPF1Q92900 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC7.45□□□□□ -1.222e-13■■□□□ 11.7
UPF1Q92900 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.573e-6■■□□□ 11.7
UPF1Q92900 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.573e-6■■□□□ 11.7
UPF1Q92900 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.274e-7■■□□□ 11.7
UPF1Q92900 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.134e-7■■□□□ 11.7
UPF1Q92900 TATDN3-206ENST00000525574 2206 ntTSL 513.19□□□□□ -0.34e-7■■□□□ 11.7
UPF1Q92900 CDC37-210ENST00000593124 1389 ntTSL 527.2■■□□□ 1.946e-8■■□□□ 11.7
UPF1Q92900 CDC37-203ENST00000588869 966 ntTSL 524.75■■□□□ 1.556e-8■■□□□ 11.7
UPF1Q92900 SLC38A10-203ENST00000539643 1988 ntTSL 1 (best)20.62■□□□□ 0.896e-8■■□□□ 11.7
UPF1Q92900 CDC37-206ENST00000589629 728 ntTSL 320.58■□□□□ 0.896e-8■■□□□ 11.7
UPF1Q92900 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.566e-13■■□□□ 11.7
UPF1Q92900 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.04■□□□□ 0.326e-8■■□□□ 11.7
UPF1Q92900 LYRM2-204ENST00000520441 791 ntTSL 3 BASIC15.1■□□□□ 0.016e-8■■□□□ 11.7
UPF1Q92900 LYRM2-201ENST00000412237 1941 ntTSL 1 (best)13.44□□□□□ -0.266e-8■■□□□ 11.7
UPF1Q92900 LYRM2-209ENST00000523793 1317 ntTSL 1 (best)12.92□□□□□ -0.346e-8■■□□□ 11.7
UPF1Q92900 TUBB-208ENST00000396389 2903 ntTSL 5 BASIC12.44□□□□□ -0.426e-8■■□□□ 11.7
UPF1Q92900 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC12.12□□□□□ -0.476e-8■■□□□ 11.7
UPF1Q92900 TUBB-207ENST00000396384 2823 ntTSL 3 BASIC11.72□□□□□ -0.536e-8■■□□□ 11.7
UPF1Q92900 TUBB-205ENST00000327892 2670 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.636e-8■■□□□ 11.7
UPF1Q92900 LYRM2-205ENST00000520897 844 ntTSL 1 (best)8.21□□□□□ -1.16e-8■■□□□ 11.7
UPF1Q92900 LYRM2-202ENST00000517396 2835 ntTSL 27.79□□□□□ -1.166e-8■■□□□ 11.7
UPF1Q92900 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.266e-8■■□□□ 11.7
UPF1Q92900 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC7.02□□□□□ -1.286e-8■■□□□ 11.7
UPF1Q92900 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC5.83□□□□□ -1.486e-8■■□□□ 11.7
UPF1Q92900 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.12□□□□□ -1.916e-8■■□□□ 11.7
UPF1Q92900 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.89□□□□□ -2.116e-8■■□□□ 11.7
UPF1Q92900 BHLHE40-201ENST00000256495 3473 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.22e-8■■□□□ 11.7
UPF1Q92900 ZFAS1-210ENST00000623640 732 ntTSL 2 BASIC13□□□□□ -0.337e-9■■□□□ 11.7
UPF1Q92900 MYO1C-204ENST00000545534 3676 ntTSL 2 BASIC11.68□□□□□ -0.549e-7■■□□□ 11.7
UPF1Q92900 POLR2K-202ENST00000519765 1021 ntTSL 512.48□□□□□ -0.411e-6■■□□□ 11.6
UPF1Q92900 PPAN-208ENST00000486482 1017 ntTSL 234.79■■■■□ 3.162e-8■■□□□ 11.6
UPF1Q92900 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC31.67■■■□□ 2.662e-8■■□□□ 11.6
UPF1Q92900 OIP5-AS1-205ENST00000558945 1269 ntTSL 529.69■■■□□ 2.342e-8■■□□□ 11.6
UPF1Q92900 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC26.53■■□□□ 1.842e-8■■□□□ 11.6
UPF1Q92900 OIP5-AS1-201ENST00000500949 8829 ntTSL 1 (best) BASIC8.87□□□□□ -0.992e-8■■□□□ 11.6
UPF1Q92900 MSN-201ENST00000360270 3944 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -14e-13■■□□□ 11.6
UPF1Q92900 BRF1-214ENST00000549044 521 ntTSL 425.87■■□□□ 1.738e-7■■□□□ 11.6
UPF1Q92900 RASGEF1A-205ENST00000472864 753 ntTSL 320.61■□□□□ 0.898e-7■■□□□ 11.6
UPF1Q92900 CLUH-205ENST00000572014 555 ntTSL 218.97■□□□□ 0.638e-7■■□□□ 11.6
UPF1Q92900 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.548e-7■■□□□ 11.6
UPF1Q92900 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.548e-7■■□□□ 11.6
UPF1Q92900 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.48e-7■■□□□ 11.6
UPF1Q92900 RASGEF1A-201ENST00000374455 632 ntTSL 517.18■□□□□ 0.348e-7■■□□□ 11.6
UPF1Q92900 BRF1-212ENST00000547562 2405 ntTSL 216.09■□□□□ 0.178e-7■■□□□ 11.6
UPF1Q92900 ARNT-204ENST00000471844 3703 ntTSL 215.68■□□□□ 0.18e-7■■□□□ 11.6
UPF1Q92900 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.018e-7■■□□□ 11.6
UPF1Q92900 GAB3-201ENST00000369568 3704 ntAPPRIS ALT2 TSL 214.43□□□□□ -0.18e-7■■□□□ 11.6
UPF1Q92900 NOL10-201ENST00000345985 3333 ntTSL 2 BASIC13.67□□□□□ -0.228e-7■■□□□ 11.6
UPF1Q92900 RASGEF1A-203ENST00000395809 4104 ntAPPRIS P3 TSL 2 BASIC12.79□□□□□ -0.368e-7■■□□□ 11.6
UPF1Q92900 BRPF3-203ENST00000441123 5380 ntTSL 1 (best)12.78□□□□□ -0.368e-7■■□□□ 11.6
UPF1Q92900 BRPF3-201ENST00000339717 4820 ntTSL 5 BASIC12.69□□□□□ -0.388e-7■■□□□ 11.6
UPF1Q92900 BRPF3-204ENST00000441730 3329 ntTSL 512.33□□□□□ -0.448e-7■■□□□ 11.6
UPF1Q92900 NOL10-205ENST00000538384 3418 ntTSL 2 BASIC11.54□□□□□ -0.568e-7■■□□□ 11.6
UPF1Q92900 BRPF3-206ENST00000449261 4816 ntTSL 511.48□□□□□ -0.578e-7■■□□□ 11.6
UPF1Q92900 BRPF3-212ENST00000534694 4628 ntTSL 5 BASIC8.61□□□□□ -1.038e-7■■□□□ 11.6
UPF1Q92900 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.392e-6■■□□□ 11.6
UPF1Q92900 LNPEP-201ENST00000231368 12752 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.134e-6■■□□□ 11.6
UPF1Q92900 STIP1-210ENST00000540887 877 ntTSL 220.9■□□□□ 0.946e-8■■□□□ 11.6
UPF1Q92900 STIP1-204ENST00000536973 738 ntTSL 518.56■□□□□ 0.566e-8■■□□□ 11.6
UPF1Q92900 ANP32A-207ENST00000486054 2015 ntTSL 216.9■□□□□ 0.34e-7■■□□□ 11.6
UPF1Q92900 AL021807.1-201ENST00000607175 565 ntBASIC11.2□□□□□ -0.623e-16■■□□□ 11.6
UPF1Q92900 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC14.86□□□□□ -0.037e-11■■□□□ 11.6
UPF1Q92900 SLC26A6-220ENST00000489483 5682 ntTSL 214.68□□□□□ -0.067e-11■■□□□ 11.6
UPF1Q92900 SLC26A6-204ENST00000383733 2545 ntTSL 1 (best) BASIC13.84□□□□□ -0.197e-11■■□□□ 11.6
UPF1Q92900 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC13.63□□□□□ -0.237e-11■■□□□ 11.6
UPF1Q92900 SLC26A6-201ENST00000307364 2586 ntTSL 1 (best)13.2□□□□□ -0.37e-11■■□□□ 11.6
UPF1Q92900 SLC26A6-207ENST00000420764 2630 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.317e-11■■□□□ 11.6
UPF1Q92900 SLC26A6-205ENST00000395550 2589 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.367e-11■■□□□ 11.6
UPF1Q92900 SLC26A6-203ENST00000358747 2729 ntTSL 1 (best) BASIC12.35□□□□□ -0.437e-11■■□□□ 11.6
Retrieved 100 of 15,879 protein–RNA pairs in 93.7 ms