Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 AMBRA1-201ENST00000314845 5023 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.345e-10■□□□□ 9.2
DDX55Q8NHQ9 IGFL2-AS1-203ENST00000598518 1037 ntTSL 1 (best) BASIC12.95□□□□□ -0.341e-8■□□□□ 9.2
DDX55Q8NHQ9 IGFL2-AS1-201ENST00000594027 294 ntTSL 312.94□□□□□ -0.341e-8■□□□□ 9.2
DDX55Q8NHQ9 SLTM-209ENST00000493062 987 ntTSL 212.93□□□□□ -0.342e-7■□□□□ 9.2
DDX55Q8NHQ9 TROAP-205ENST00000547807 915 ntAPPRIS ALT2 TSL 312.93□□□□□ -0.343e-11■□□□□ 9.2
DDX55Q8NHQ9 STX16-205ENST00000361830 4318 ntTSL 5 BASIC12.92□□□□□ -0.342e-8■□□□□ 9.2
DDX55Q8NHQ9 AP1G2-211ENST00000554477 592 ntTSL 312.89□□□□□ -0.352e-7■□□□□ 9.2
DDX55Q8NHQ9 LEPROT-204ENST00000488747 345 ntTSL 512.75□□□□□ -0.373e-11■□□□□ 9.2
DDX55Q8NHQ9 GSTK1-204ENST00000442394 2219 ntTSL 512.62□□□□□ -0.392e-16■□□□□ 9.2
DDX55Q8NHQ9 NLRP1-201ENST00000262467 5131 ntTSL 5 BASIC12.54□□□□□ -0.47e-6■□□□□ 9.2
DDX55Q8NHQ9 AP1G2-214ENST00000554892 658 ntTSL 212.5□□□□□ -0.412e-7■□□□□ 9.2
DDX55Q8NHQ9 MRPL38-208ENST00000477371 566 ntTSL 212.29□□□□□ -0.447e-6■□□□□ 9.2
DDX55Q8NHQ9 AP1G2-202ENST00000397120 2609 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.452e-7■□□□□ 9.2
DDX55Q8NHQ9 ERI3-202ENST00000372259 1332 ntTSL 5 BASIC12.19□□□□□ -0.461e-12■□□□□ 9.2
DDX55Q8NHQ9 AMBRA1-211ENST00000533727 4817 ntTSL 1 (best) BASIC12.17□□□□□ -0.465e-10■□□□□ 9.2
DDX55Q8NHQ9 LY6G5B-207ENST00000375864 2654 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.465e-10■□□□□ 9.2
DDX55Q8NHQ9 AC020915.6-201ENST00000637233 3042 ntAPPRIS P5 TSL 5 BASIC12.08□□□□□ -0.482e-7■□□□□ 9.2
DDX55Q8NHQ9 SLTM-212ENST00000557924 3021 ntTSL 212□□□□□ -0.492e-7■□□□□ 9.2
DDX55Q8NHQ9 GTF3C2-213ENST00000495298 1064 ntTSL 212□□□□□ -0.491e-12■□□□□ 9.2
DDX55Q8NHQ9 GTF3C2-207ENST00000457098 762 ntTSL 311.96□□□□□ -0.491e-12■□□□□ 9.2
DDX55Q8NHQ9 MAP2K2-206ENST00000597263 552 ntTSL 311.82□□□□□ -0.525e-10■□□□□ 9.2
DDX55Q8NHQ9 AMBRA1-202ENST00000458649 5351 ntTSL 2 BASIC11.8□□□□□ -0.525e-10■□□□□ 9.2
DDX55Q8NHQ9 GTF3C2-201ENST00000264720 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.541e-12■□□□□ 9.2
DDX55Q8NHQ9 GTF3C2-206ENST00000454704 1440 ntTSL 1 (best)11.64□□□□□ -0.551e-12■□□□□ 9.2
DDX55Q8NHQ9 LRP5-204ENST00000529481 551 ntTSL 311.21□□□□□ -0.614e-9■□□□□ 9.2
DDX55Q8NHQ9 USF1-204ENST00000472217 1097 ntTSL 211.16□□□□□ -0.627e-6■□□□□ 9.2
DDX55Q8NHQ9 IGFL2-AS1-202ENST00000595673 304 ntTSL 311.14□□□□□ -0.631e-8■□□□□ 9.2
DDX55Q8NHQ9 AP1G2-212ENST00000554554 2955 ntTSL 211.12□□□□□ -0.632e-7■□□□□ 9.2
DDX55Q8NHQ9 NLRP1-215ENST00000613500 4494 ntTSL 5 BASIC11.04□□□□□ -0.647e-6■□□□□ 9.2
DDX55Q8NHQ9 STX16-204ENST00000359617 4273 ntTSL 5 BASIC11□□□□□ -0.652e-8■□□□□ 9.2
DDX55Q8NHQ9 NLRP1-216ENST00000617618 4788 ntAPPRIS P4 TSL 5 BASIC10.95□□□□□ -0.667e-6■□□□□ 9.2
DDX55Q8NHQ9 STX16-203ENST00000358029 4329 ntAPPRIS ALT1 TSL 1 (best) BASIC10.95□□□□□ -0.662e-8■□□□□ 9.2
DDX55Q8NHQ9 MRPL38-207ENST00000477023 446 ntTSL 310.89□□□□□ -0.677e-6■□□□□ 9.2
DDX55Q8NHQ9 PPIH-203ENST00000372550 665 ntTSL 1 (best) BASIC10.84□□□□□ -0.674e-15■□□□□ 9.2
DDX55Q8NHQ9 DDB1-212ENST00000538470 858 ntTSL 210.78□□□□□ -0.683e-20■□□□□ 9.2
DDX55Q8NHQ9 STX16-206ENST00000371132 4552 ntTSL 1 (best) BASIC10.75□□□□□ -0.692e-8■□□□□ 9.2
DDX55Q8NHQ9 GTF3C2-205ENST00000431028 592 ntTSL 310.69□□□□□ -0.71e-12■□□□□ 9.2
DDX55Q8NHQ9 SLTM-202ENST00000380516 4147 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.72e-7■□□□□ 9.2
DDX55Q8NHQ9 NLRP1-203ENST00000345221 4656 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.717e-6■□□□□ 9.2
DDX55Q8NHQ9 NLRP1-217ENST00000619223 4698 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.717e-6■□□□□ 9.2
DDX55Q8NHQ9 NLRP1-214ENST00000577119 4200 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.727e-6■□□□□ 9.2
DDX55Q8NHQ9 SNHG17-204ENST00000423536 517 ntTSL 2 BASIC10.52□□□□□ -0.737e-6■□□□□ 9.2
DDX55Q8NHQ9 TNNT1-206ENST00000586649 340 ntTSL 510.48□□□□□ -0.731e-12■□□□□ 9.2
DDX55Q8NHQ9 AP1G2-232ENST00000557391 459 ntTSL 210.41□□□□□ -0.742e-7■□□□□ 9.2
DDX55Q8NHQ9 GSTK1-206ENST00000473649 2692 ntTSL 210.25□□□□□ -0.772e-16■□□□□ 9.2
DDX55Q8NHQ9 NLRP1-210ENST00000572272 4422 ntAPPRIS P4 TSL 1 (best) BASIC9.99□□□□□ -0.817e-6■□□□□ 9.2
DDX55Q8NHQ9 GTF3C2-202ENST00000359541 3992 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.831e-12■□□□□ 9.2
DDX55Q8NHQ9 GAB3-202ENST00000369575 4718 ntAPPRIS P3 TSL 1 (best) BASIC9.81□□□□□ -0.841e-12■□□□□ 9.2
DDX55Q8NHQ9 NLRP1-204ENST00000354411 4332 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.867e-6■□□□□ 9.2
DDX55Q8NHQ9 PCTP-205ENST00000572536 647 ntTSL 39.64□□□□□ -0.872e-7■□□□□ 9.2
DDX55Q8NHQ9 AMBRA1-206ENST00000528950 4102 ntTSL 5 BASIC9.61□□□□□ -0.875e-10■□□□□ 9.2
DDX55Q8NHQ9 DDB1-217ENST00000540166 3906 ntTSL 29.45□□□□□ -0.93e-20■□□□□ 9.2
DDX55Q8NHQ9 PCTP-208ENST00000576221 609 ntTSL 59.41□□□□□ -0.92e-7■□□□□ 9.2
DDX55Q8NHQ9 SLTM-208ENST00000492526 3022 ntTSL 28.79□□□□□ -12e-7■□□□□ 9.2
DDX55Q8NHQ9 GYPB-206ENST00000506516 473 ntTSL 1 (best)8.75□□□□□ -1.015e-10■□□□□ 9.2
DDX55Q8NHQ9 STX16-NPEPL1-201ENST00000413559 557 ntTSL 38.41□□□□□ -1.062e-8■□□□□ 9.2
DDX55Q8NHQ9 AC020915.1-208ENST00000590505 3889 ntTSL 28.14□□□□□ -1.112e-7■□□□□ 9.2
DDX55Q8NHQ9 PCTP-204ENST00000571489 3932 ntTSL 1 (best)8.13□□□□□ -1.112e-7■□□□□ 9.2
DDX55Q8NHQ9 RAB28-207ENST00000511649 715 ntTSL 58.08□□□□□ -1.122e-7■□□□□ 9.2
DDX55Q8NHQ9 GYPB-204ENST00000504951 632 ntTSL 1 (best)7.77□□□□□ -1.175e-10■□□□□ 9.2
DDX55Q8NHQ9 STX6-202ENST00000469135 4842 ntTSL 1 (best)7.71□□□□□ -1.182e-7■□□□□ 9.2
DDX55Q8NHQ9 GYPB-205ENST00000505583 583 ntTSL 1 (best)7.39□□□□□ -1.235e-10■□□□□ 9.2
DDX55Q8NHQ9 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC7.39□□□□□ -1.235e-10■□□□□ 9.2
DDX55Q8NHQ9 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.234e-15■□□□□ 9.2
DDX55Q8NHQ9 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.234e-15■□□□□ 9.2
DDX55Q8NHQ9 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC7.29□□□□□ -1.243e-11■□□□□ 9.2
DDX55Q8NHQ9 GYPB-208ENST00000507009 388 ntTSL 1 (best)7.29□□□□□ -1.245e-10■□□□□ 9.2
DDX55Q8NHQ9 GYPB-215ENST00000513677 221 ntTSL 1 (best)7.29□□□□□ -1.245e-10■□□□□ 9.2
DDX55Q8NHQ9 GYPB-212ENST00000511198 444 ntTSL 1 (best)6.97□□□□□ -1.295e-10■□□□□ 9.2
DDX55Q8NHQ9 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.337e-6■□□□□ 9.2
DDX55Q8NHQ9 GAB3-206ENST00000496390 4240 ntTSL 1 (best)6.73□□□□□ -1.331e-12■□□□□ 9.2
DDX55Q8NHQ9 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC6.56□□□□□ -1.365e-10■□□□□ 9.2
DDX55Q8NHQ9 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC6.51□□□□□ -1.373e-11■□□□□ 9.2
DDX55Q8NHQ9 LEPROT-203ENST00000484243 549 ntTSL 36.29□□□□□ -1.43e-11■□□□□ 9.2
DDX55Q8NHQ9 RHEB-203ENST00000470370 501 ntTSL 55.96□□□□□ -1.461e-8■□□□□ 9.2
DDX55Q8NHQ9 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.46□□□□□ -1.534e-15■□□□□ 9.2
DDX55Q8NHQ9 RHEB-202ENST00000470072 764 ntTSL 45.45□□□□□ -1.541e-8■□□□□ 9.2
DDX55Q8NHQ9 GYPB-214ENST00000513557 277 ntTSL 1 (best)5.01□□□□□ -1.615e-10■□□□□ 9.2
DDX55Q8NHQ9 GYPB-203ENST00000503255 486 ntTSL 1 (best)4.82□□□□□ -1.645e-10■□□□□ 9.2
DDX55Q8NHQ9 RHEB-206ENST00000482053 557 ntTSL 34.33□□□□□ -1.721e-8■□□□□ 9.2
DDX55Q8NHQ9 GYPB-207ENST00000506679 606 ntTSL 1 (best)3.89□□□□□ -1.795e-10■□□□□ 9.2
DDX55Q8NHQ9 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.7□□□□□ -1.825e-10■□□□□ 9.2
DDX55Q8NHQ9 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.825e-10■□□□□ 9.2
DDX55Q8NHQ9 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.833e-11■□□□□ 9.2
DDX55Q8NHQ9 GYPB-211ENST00000510196 508 ntTSL 1 (best)3.59□□□□□ -1.835e-10■□□□□ 9.2
DDX55Q8NHQ9 PRKCSH-213ENST00000591510 591 ntTSL 319.37■□□□□ 0.691e-21■□□□□ 9.2
DDX55Q8NHQ9 S100P-201ENST00000296370 1279 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.572e-9■□□□□ 9.2
DDX55Q8NHQ9 S100P-202ENST00000513778 313 ntTSL 36.56□□□□□ -1.362e-9■□□□□ 9.2
DDX55Q8NHQ9 RPS6-205ENST00000498815 480 ntTSL 24.99□□□□□ -1.613e-21■□□□□ 9.2
DDX55Q8NHQ9 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.249e-7■□□□□ 9.2
DDX55Q8NHQ9 APOE-202ENST00000425718 923 ntTSL 1 (best)28.59■■■□□ 2.171e-51■□□□□ 9.2
DDX55Q8NHQ9 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC32.86■■■□□ 2.858e-8■□□□□ 9.1
DDX55Q8NHQ9 TINAGL1-207ENST00000478398 765 ntTSL 324.63■■□□□ 1.531e-12■□□□□ 9.1
DDX55Q8NHQ9 TINAGL1-203ENST00000461030 820 ntTSL 523.24■■□□□ 1.311e-12■□□□□ 9.1
DDX55Q8NHQ9 TINAGL1-205ENST00000466998 680 ntTSL 222.42■■□□□ 1.181e-12■□□□□ 9.1
DDX55Q8NHQ9 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.168e-9■□□□□ 9.1
DDX55Q8NHQ9 HAAO-203ENST00000402698 1522 ntTSL 521.99■■□□□ 1.118e-9■□□□□ 9.1
DDX55Q8NHQ9 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.88e-8■□□□□ 9.1
DDX55Q8NHQ9 ENO2-210ENST00000539713 543 ntTSL 419.92■□□□□ 0.788e-9■□□□□ 9.1
DDX55Q8NHQ9 ENO2-207ENST00000537688 547 ntTSL 519.85■□□□□ 0.778e-9■□□□□ 9.1
Retrieved 100 of 15,504 protein–RNA pairs in 82.2 ms