RNA–Protein interactions for RNA: ENST00000511649.5

RAB28-207, Transcript of RAB28, member RAS oncogene family, humanhuman

TSL 5

Gene RAB28, Length 715 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB28-207ENST00000511649 AEBP2Q6ZN18 517 aaPredicted RBP23.68■■□□□ 1.38
RAB28-207ENST00000511649 CHIC1Q5VXU3 224 aa22.96■■□□□ 1.27
RAB28-207ENST00000511649 PHF23Q9BUL5 403 aaPredicted RBP20.17■□□□□ 0.82
RAB28-207ENST00000511649 SENP3Q9H4L4 574 aaPredicted RBP20.06■□□□□ 0.8
RAB28-207ENST00000511649 FOXD1Q16676 465 aa18.7■□□□□ 0.58
RAB28-207ENST00000511649 PLPPR3Q6T4P5 718 aa18.61■□□□□ 0.57
RAB28-207ENST00000511649 POTEDQ86YR6 584 aa18.46■□□□□ 0.55
RAB28-207ENST00000511649 PPP6R1Q9UPN7 881 aa17.84■□□□□ 0.45
RAB28-207ENST00000511649 MSH5O43196 834 aa17.83■□□□□ 0.44
RAB28-207ENST00000511649 ADRA2BP18089 450 aa17.81■□□□□ 0.44
RAB28-207ENST00000511649 PIAS4Q8N2W9 510 aaPredicted RBP17.57■□□□□ 0.4
RAB28-207ENST00000511649 NISCHQ9Y2I1 1504 aa16.44■□□□□ 0.22
RAB28-207ENST00000511649 PPP4R3CPQ6ZMV5 832 aa16.39■□□□□ 0.21
RAB28-207ENST00000511649 SCAF1Q9H7N4 1312 aaKnown RBP16.25■□□□□ 0.19
RAB28-207ENST00000511649 MAPK8IP2Q13387 824 aaPredicted RBP16.23■□□□□ 0.19
RAB28-207ENST00000511649 DMRT2Q9Y5R5 561 aa15.99■□□□□ 0.15
RAB28-207ENST00000511649 KCNA4P22459 653 aa15.95■□□□□ 0.14
RAB28-207ENST00000511649 CNKSR2Q8WXI2 1034 aa15.94■□□□□ 0.14
RAB28-207ENST00000511649 NCBP3Q53F19 620 aaKnown RBP15.92■□□□□ 0.14
RAB28-207ENST00000511649 NPM3O75607 178 aaKnown RBP15.72■□□□□ 0.11
RAB28-207ENST00000511649 CACNB1Q02641 598 aaPredicted RBP15.68■□□□□ 0.1
RAB28-207ENST00000511649 RNF216Q9NWF9 866 aaPredicted RBP15.65■□□□□ 0.1
RAB28-207ENST00000511649 HOXD11P31277 338 aaPredicted RBP15.61■□□□□ 0.09
RAB28-207ENST00000511649 DCAF8L1A6NGE4 600 aa15.34■□□□□ 0.05
RAB28-207ENST00000511649 DNAJC5BQ9UF47 199 aa15.29■□□□□ 0.04
RAB28-207ENST00000511649 SLC4A1APQ9BWU0 796 aaKnown RBP15.17■□□□□ 0.02
RAB28-207ENST00000511649 RNF39Q9H2S5 420 aa15.12■□□□□ 0.01
RAB28-207ENST00000511649 C1QBPQ07021 282 aaKnown RBP14.9□□□□□ -0.02
RAB28-207ENST00000511649 SLC4A2P04920 1241 aa14.86□□□□□ -0.03
RAB28-207ENST00000511649 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.85□□□□□ -0.03
RAB28-207ENST00000511649 ABCC9O60706 1549 aa14.75□□□□□ -0.05
RAB28-207ENST00000511649 CCDC180Q9P1Z9 1646 aa14.74□□□□□ -0.05
RAB28-207ENST00000511649 FOXD4L1Q9NU39 408 aa14.71□□□□□ -0.05
RAB28-207ENST00000511649 ZBTB22O15209 634 aa14.69□□□□□ -0.06
RAB28-207ENST00000511649 EHMT2Q96KQ7 1210 aa14.67□□□□□ -0.06
RAB28-207ENST00000511649 U3KPZ7 1027 aaPredicted RBP14.63□□□□□ -0.07
RAB28-207ENST00000511649 CSRNP3Q8WYN3 585 aa14.55□□□□□ -0.08
RAB28-207ENST00000511649 MYCNP04198 464 aaPredicted RBP14.53□□□□□ -0.08
RAB28-207ENST00000511649 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.4□□□□□ -0.1
RAB28-207ENST00000511649 HNRNPUL2Q1KMD3 747 aaKnown RBP14.4□□□□□ -0.1
RAB28-207ENST00000511649 POTEHQ6S545 545 aa14.36□□□□□ -0.11
RAB28-207ENST00000511649 SAMD1Q6SPF0 538 aaPredicted RBP14.35□□□□□ -0.11
RAB28-207ENST00000511649 SPINK5Q9NQ38 1064 aaPredicted RBP14.29□□□□□ -0.12
RAB28-207ENST00000511649 APLP2Q06481 763 aa14.26□□□□□ -0.13
RAB28-207ENST00000511649 CAPN15O75808 1086 aa14.21□□□□□ -0.13
RAB28-207ENST00000511649 ATXN8OSP0DMR3 200 aa14.18□□□□□ -0.14
RAB28-207ENST00000511649 ATF5Q9Y2D1 282 aaPredicted RBP14.14□□□□□ -0.15
RAB28-207ENST00000511649 TRHP20396 242 aaPredicted RBP14.11□□□□□ -0.15
RAB28-207ENST00000511649 ZNF219Q9P2Y4 722 aaPredicted RBP14.09□□□□□ -0.15
RAB28-207ENST00000511649 DSG3P32926 999 aa14.02□□□□□ -0.17
RAB28-207ENST00000511649 RB1CC1Q8TDY2 1594 aa13.96□□□□□ -0.17
RAB28-207ENST00000511649 ABCB7O75027 752 aa13.96□□□□□ -0.17
RAB28-207ENST00000511649 NACADO15069 1562 aa13.88□□□□□ -0.19
RAB28-207ENST00000511649 UNC13AQ9UPW8 1703 aa13.84□□□□□ -0.19
RAB28-207ENST00000511649 POLA2Q14181 598 aa13.83□□□□□ -0.2
RAB28-207ENST00000511649 BICRAQ9NZM4 1560 aa13.73□□□□□ -0.21
RAB28-207ENST00000511649 MYO15BQ96JP2 1530 aa13.7□□□□□ -0.22
RAB28-207ENST00000511649 PABPN1Q86U42 306 aaKnown RBP eCLIP13.7□□□□□ -0.22
RAB28-207ENST00000511649 DCAF8L2P0C7V8 631 aa13.69□□□□□ -0.22
RAB28-207ENST00000511649 ZCCHC6Q5VYS8 1495 aaKnown RBP13.67□□□□□ -0.22
RAB28-207ENST00000511649 ZBTB12Q9Y330 459 aaPredicted RBP13.62□□□□□ -0.23
RAB28-207ENST00000511649 DCAF1Q9Y4B6 1507 aa13.55□□□□□ -0.24
RAB28-207ENST00000511649 FBLN2P98095 1184 aa13.53□□□□□ -0.24
RAB28-207ENST00000511649 MKRN4PQ13434 485 aaPredicted RBP13.53□□□□□ -0.24
RAB28-207ENST00000511649 SCRIBQ14160 1630 aa13.48□□□□□ -0.25
RAB28-207ENST00000511649 OSCARQ8IYS5 282 aa13.39□□□□□ -0.27
RAB28-207ENST00000511649 RBM42Q9BTD8 480 aaKnown RBP13.37□□□□□ -0.27
RAB28-207ENST00000511649 SHROOM4Q9ULL8 1493 aa13.36□□□□□ -0.27
RAB28-207ENST00000511649 CC2D2AQ9P2K1 1620 aa13.35□□□□□ -0.27
RAB28-207ENST00000511649 EIF4G1Q04637 1599 aaKnown RBP13.31□□□□□ -0.28
RAB28-207ENST00000511649 CHRDL2Q6WN34 429 aa13.29□□□□□ -0.28
RAB28-207ENST00000511649 SPDYE2BA6NHP3 402 aa13.26□□□□□ -0.29
RAB28-207ENST00000511649 SPDYE6P0CI01 402 aa13.26□□□□□ -0.29
RAB28-207ENST00000511649 SPDYE2Q495Y8 402 aa13.26□□□□□ -0.29
RAB28-207ENST00000511649 CECR2Q9BXF3 1484 aa13.25□□□□□ -0.29
RAB28-207ENST00000511649 SPDYE4A6NLX3 237 aa13.18□□□□□ -0.3
RAB28-207ENST00000511649 ZNF692Q9BU19 519 aaPredicted RBP13.17□□□□□ -0.3
RAB28-207ENST00000511649 SSUH2Q9Y2M2 353 aa13.16□□□□□ -0.3
RAB28-207ENST00000511649 FKBP8Q14318 412 aa13.15□□□□□ -0.3
RAB28-207ENST00000511649 SP7Q8TDD2 431 aaPredicted RBP13.15□□□□□ -0.3
RAB28-207ENST00000511649 AKT1S1Q96B36 256 aa13.13□□□□□ -0.31
RAB28-207ENST00000511649 REM2Q8IYK8 340 aaPredicted RBP13.02□□□□□ -0.33
RAB28-207ENST00000511649 PROM2Q8N271 834 aa12.99□□□□□ -0.33
RAB28-207ENST00000511649 PITPNM1O00562 1244 aa12.9□□□□□ -0.34
RAB28-207ENST00000511649 SPDYE1Q8NFV5 336 aaPredicted RBP12.87□□□□□ -0.35
RAB28-207ENST00000511649 SMARCA4P51532 1647 aa12.85□□□□□ -0.35
RAB28-207ENST00000511649 NCAPD3P42695 1498 aa12.84□□□□□ -0.35
RAB28-207ENST00000511649 ATAD2BQ9ULI0 1458 aa12.84□□□□□ -0.35
RAB28-207ENST00000511649 CLEC11AQ9Y240 323 aa12.82□□□□□ -0.36
RAB28-207ENST00000511649 PIP4P2Q8N4L2 257 aa12.81□□□□□ -0.36
RAB28-207ENST00000511649 HAX1O00165 279 aa12.79□□□□□ -0.36
RAB28-207ENST00000511649 STAG3Q9UJ98 1225 aa12.77□□□□□ -0.37
RAB28-207ENST00000511649 HMGXB3Q12766 1538 aa12.77□□□□□ -0.37
RAB28-207ENST00000511649 NESP48681 1621 aa12.73□□□□□ -0.37
RAB28-207ENST00000511649 SMARCA2P51531 1590 aa12.73□□□□□ -0.37
RAB28-207ENST00000511649 PEG3Q9GZU2 1588 aa12.73□□□□□ -0.37
RAB28-207ENST00000511649 MROH2BQ7Z745 1585 aa12.72□□□□□ -0.37
RAB28-207ENST00000511649 BAZ1AQ9NRL2 1556 aaPredicted RBP12.71□□□□□ -0.37
RAB28-207ENST00000511649 FBXO3Q9UK99 471 aa12.69□□□□□ -0.38
RAB28-207ENST00000511649 PRR29P0C7W0 189 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms