Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCANP13611 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
VCANP13611 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCANP13611 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.05■□□□□ 0.48
VCANP13611 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.05■□□□□ 0.48
VCANP13611 AL353593.2-201ENST00000602529 1483 ntBASIC18.05■□□□□ 0.48
VCANP13611 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCANP13611 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
VCANP13611 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.04■□□□□ 0.48
VCANP13611 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCANP13611 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VCANP13611 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.04■□□□□ 0.48
VCANP13611 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC18.04■□□□□ 0.48
VCANP13611 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC18.04■□□□□ 0.48
VCANP13611 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC18.04■□□□□ 0.48
VCANP13611 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCANP13611 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.04■□□□□ 0.48
VCANP13611 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.04■□□□□ 0.48
VCANP13611 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.04■□□□□ 0.48
VCANP13611 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
VCANP13611 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCANP13611 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCANP13611 SPCS2P4-201ENST00000436160 681 ntBASIC18.04■□□□□ 0.48
VCANP13611 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC18.04■□□□□ 0.48
VCANP13611 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VCANP13611 COG4-212ENST00000564653 590 ntTSL 5 BASIC18.04■□□□□ 0.48
VCANP13611 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC18.04■□□□□ 0.48
VCANP13611 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VCANP13611 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.04■□□□□ 0.48
VCANP13611 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.04■□□□□ 0.48
VCANP13611 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCANP13611 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC18.04■□□□□ 0.48
VCANP13611 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.04■□□□□ 0.48
VCANP13611 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VCANP13611 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCANP13611 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VCANP13611 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VCANP13611 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCANP13611 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VCANP13611 APOC4-201ENST00000591600 348 ntTSL 3 BASIC18.04■□□□□ 0.48
VCANP13611 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.04■□□□□ 0.48
VCANP13611 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCANP13611 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.03■□□□□ 0.48
VCANP13611 AC018445.3-201ENST00000624177 1945 ntBASIC18.03■□□□□ 0.48
VCANP13611 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
VCANP13611 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VCANP13611 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VCANP13611 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
VCANP13611 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC18.03■□□□□ 0.48
VCANP13611 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VCANP13611 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC18.03■□□□□ 0.48
VCANP13611 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VCANP13611 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.03■□□□□ 0.48
VCANP13611 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VCANP13611 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VCANP13611 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
VCANP13611 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.03■□□□□ 0.48
VCANP13611 ANKRD19P-201ENST00000338192 862 ntBASIC18.03■□□□□ 0.48
VCANP13611 AC002056.1-201ENST00000395613 760 ntBASIC18.03■□□□□ 0.48
VCANP13611 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.03■□□□□ 0.48
VCANP13611 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
VCANP13611 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VCANP13611 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.03■□□□□ 0.48
VCANP13611 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VCANP13611 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VCANP13611 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC18.02■□□□□ 0.48
VCANP13611 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC18.02■□□□□ 0.48
VCANP13611 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VCANP13611 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC18.02■□□□□ 0.48
VCANP13611 AC244093.1-201ENST00000610837 814 ntBASIC18.02■□□□□ 0.48
VCANP13611 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VCANP13611 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VCANP13611 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
VCANP13611 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
VCANP13611 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VCANP13611 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
VCANP13611 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.02■□□□□ 0.48
VCANP13611 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
VCANP13611 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.02■□□□□ 0.48
VCANP13611 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VCANP13611 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
VCANP13611 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VCANP13611 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC18.02■□□□□ 0.48
VCANP13611 BNIP3P42-201ENST00000454982 569 ntBASIC18.02■□□□□ 0.48
VCANP13611 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC18.02■□□□□ 0.48
VCANP13611 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.02■□□□□ 0.48
VCANP13611 AC009407.1-201ENST00000568958 598 ntBASIC18.02■□□□□ 0.48
VCANP13611 BNIP3P29-201ENST00000598302 571 ntBASIC18.02■□□□□ 0.48
VCANP13611 AC011447.5-201ENST00000616168 564 ntBASIC18.02■□□□□ 0.48
VCANP13611 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
VCANP13611 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VCANP13611 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VCANP13611 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VCANP13611 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.47
VCANP13611 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.02■□□□□ 0.47
VCANP13611 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.47
VCANP13611 AC007064.4-201ENST00000637740 555 ntBASIC18.02■□□□□ 0.47
VCANP13611 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.02■□□□□ 0.47
VCANP13611 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.02■□□□□ 0.47
VCANP13611 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms