Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PROM1O43490 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PROM1O43490 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.75■□□□□ 0.27
PROM1O43490 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
PROM1O43490 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.75■□□□□ 0.27
PROM1O43490 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PROM1O43490 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PROM1O43490 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PROM1O43490 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PROM1O43490 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PROM1O43490 SIRPAP1-201ENST00000448467 1770 ntBASIC16.74■□□□□ 0.27
PROM1O43490 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PROM1O43490 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.74■□□□□ 0.27
PROM1O43490 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
PROM1O43490 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.74■□□□□ 0.27
PROM1O43490 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
PROM1O43490 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PROM1O43490 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PROM1O43490 AC007967.3-201ENST00000434308 558 ntBASIC16.74■□□□□ 0.27
PROM1O43490 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.74■□□□□ 0.27
PROM1O43490 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.74■□□□□ 0.27
PROM1O43490 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
PROM1O43490 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.74■□□□□ 0.27
PROM1O43490 TOB2P1-201ENST00000469761 992 ntBASIC16.74■□□□□ 0.27
PROM1O43490 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.74■□□□□ 0.27
PROM1O43490 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.74■□□□□ 0.27
PROM1O43490 Z69720.1-201ENST00000601483 472 ntBASIC16.74■□□□□ 0.27
PROM1O43490 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.74■□□□□ 0.27
PROM1O43490 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
PROM1O43490 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PROM1O43490 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PROM1O43490 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
PROM1O43490 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
PROM1O43490 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PROM1O43490 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PROM1O43490 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PROM1O43490 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.74■□□□□ 0.27
PROM1O43490 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.74■□□□□ 0.27
PROM1O43490 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PROM1O43490 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PROM1O43490 AC012313.1-201ENST00000593393 3059 ntBASIC16.73■□□□□ 0.27
PROM1O43490 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
PROM1O43490 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PROM1O43490 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
PROM1O43490 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.73■□□□□ 0.27
PROM1O43490 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
PROM1O43490 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
PROM1O43490 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PROM1O43490 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PROM1O43490 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PROM1O43490 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PROM1O43490 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PROM1O43490 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.73■□□□□ 0.27
PROM1O43490 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PROM1O43490 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.73■□□□□ 0.27
PROM1O43490 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PROM1O43490 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.73■□□□□ 0.27
PROM1O43490 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.73■□□□□ 0.27
PROM1O43490 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.73■□□□□ 0.27
PROM1O43490 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.73■□□□□ 0.27
PROM1O43490 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.73■□□□□ 0.27
PROM1O43490 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.73■□□□□ 0.27
PROM1O43490 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.73■□□□□ 0.27
PROM1O43490 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.73■□□□□ 0.27
PROM1O43490 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.73■□□□□ 0.27
PROM1O43490 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.73■□□□□ 0.27
PROM1O43490 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PROM1O43490 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.73■□□□□ 0.27
PROM1O43490 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
PROM1O43490 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PROM1O43490 HLA-J-201ENST00000462773 1622 ntBASIC16.73■□□□□ 0.27
PROM1O43490 AC009053.2-201ENST00000563701 2365 ntBASIC16.73■□□□□ 0.27
PROM1O43490 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PROM1O43490 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PROM1O43490 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PROM1O43490 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
PROM1O43490 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PROM1O43490 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.72■□□□□ 0.27
PROM1O43490 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PROM1O43490 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PROM1O43490 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
PROM1O43490 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.72■□□□□ 0.27
PROM1O43490 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PROM1O43490 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PROM1O43490 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PROM1O43490 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PROM1O43490 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.72■□□□□ 0.27
PROM1O43490 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.72■□□□□ 0.27
PROM1O43490 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.72■□□□□ 0.27
PROM1O43490 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PROM1O43490 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PROM1O43490 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
PROM1O43490 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PROM1O43490 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.72■□□□□ 0.27
PROM1O43490 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PROM1O43490 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PROM1O43490 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
PROM1O43490 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.72■□□□□ 0.27
PROM1O43490 LINC00265-3P-201ENST00000447588 903 ntBASIC16.72■□□□□ 0.27
PROM1O43490 KRT17P6-201ENST00000453795 1220 ntBASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms