Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.74■□□□□ 0.75
MSH4O15457 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSH4O15457 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
MSH4O15457 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
MSH4O15457 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH4O15457 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH4O15457 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.74■□□□□ 0.75
MSH4O15457 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH4O15457 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH4O15457 AL662844.1-201ENST00000546340 181 ntBASIC19.74■□□□□ 0.75
MSH4O15457 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.74■□□□□ 0.75
MSH4O15457 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.74■□□□□ 0.75
MSH4O15457 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.74■□□□□ 0.75
MSH4O15457 AL773604.1-201ENST00000617417 272 ntBASIC19.74■□□□□ 0.75
MSH4O15457 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.74■□□□□ 0.75
MSH4O15457 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.74■□□□□ 0.75
MSH4O15457 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.74■□□□□ 0.75
MSH4O15457 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC19.74■□□□□ 0.75
MSH4O15457 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH4O15457 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH4O15457 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH4O15457 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.74■□□□□ 0.75
MSH4O15457 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSH4O15457 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH4O15457 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
MSH4O15457 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19.74■□□□□ 0.75
MSH4O15457 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
MSH4O15457 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH4O15457 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
MSH4O15457 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.73■□□□□ 0.75
MSH4O15457 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.73■□□□□ 0.75
MSH4O15457 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH4O15457 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH4O15457 RPS2P1-201ENST00000434010 821 ntBASIC19.73■□□□□ 0.75
MSH4O15457 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH4O15457 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH4O15457 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.73■□□□□ 0.75
MSH4O15457 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH4O15457 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH4O15457 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH4O15457 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH4O15457 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 LYSMD4-203ENST00000378904 2122 ntBASIC19.73■□□□□ 0.75
MSH4O15457 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.73■□□□□ 0.75
MSH4O15457 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
MSH4O15457 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH4O15457 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH4O15457 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH4O15457 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
MSH4O15457 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH4O15457 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MSH4O15457 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.72■□□□□ 0.75
MSH4O15457 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MSH4O15457 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH4O15457 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC19.72■□□□□ 0.75
MSH4O15457 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH4O15457 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC19.72■□□□□ 0.75
MSH4O15457 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH4O15457 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.72■□□□□ 0.75
MSH4O15457 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH4O15457 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH4O15457 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH4O15457 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.72■□□□□ 0.75
MSH4O15457 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.72■□□□□ 0.75
MSH4O15457 AL031284.1-201ENST00000419297 478 ntBASIC19.72■□□□□ 0.75
MSH4O15457 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.72■□□□□ 0.75
MSH4O15457 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
MSH4O15457 TK1-204ENST00000590430 683 ntTSL 3 BASIC19.72■□□□□ 0.75
MSH4O15457 AL049840.3-201ENST00000602669 611 ntBASIC19.72■□□□□ 0.75
MSH4O15457 AC064862.7-201ENST00000604520 867 ntBASIC19.72■□□□□ 0.75
MSH4O15457 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MSH4O15457 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MSH4O15457 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH4O15457 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.72■□□□□ 0.75
MSH4O15457 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC19.72■□□□□ 0.75
MSH4O15457 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.72■□□□□ 0.75
MSH4O15457 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.72■□□□□ 0.75
MSH4O15457 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.72■□□□□ 0.75
MSH4O15457 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH4O15457 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC19.71■□□□□ 0.75
MSH4O15457 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH4O15457 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms