Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 DLX3-202ENST00000512495 834 ntTSL 2 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 MIR3180-5-201ENST00000583743 153 ntBASIC12.92□□□□□ -0.34
SMKR1H3BMG3 AC008403.3-201ENST00000598924 454 ntBASIC12.92□□□□□ -0.34
SMKR1H3BMG3 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
SMKR1H3BMG3 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 NCF1B-203ENST00000435988 1254 ntBASIC12.91□□□□□ -0.34
SMKR1H3BMG3 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 DUTP2-201ENST00000519164 463 ntBASIC12.91□□□□□ -0.34
SMKR1H3BMG3 UNC93B5-201ENST00000530315 699 ntBASIC12.91□□□□□ -0.34
SMKR1H3BMG3 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
SMKR1H3BMG3 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms