Protein–RNA interactions for Protein: A6NER0

TBC1D3F, TBC1 domain family member 3F, humanhuman

Predicted RBP Predictions only

Length 549 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TBC1D3FA6NER0 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.53■□□□□ 0.4
TBC1D3FA6NER0 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TBC1D3FA6NER0 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 KRT18P27-201ENST00000427733 1299 ntBASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 AC136632.2-201ENST00000512891 861 ntBASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 AC019129.2-201ENST00000609837 1235 ntBASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.52■□□□□ 0.4
TBC1D3FA6NER0 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TBC1D3FA6NER0 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TBC1D3FA6NER0 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.39
TBC1D3FA6NER0 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.52■□□□□ 0.39
TBC1D3FA6NER0 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TBC1D3FA6NER0 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
TBC1D3FA6NER0 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TBC1D3FA6NER0 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
TBC1D3FA6NER0 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.39
TBC1D3FA6NER0 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TBC1D3FA6NER0 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 AC073621.1-201ENST00000392730 636 ntBASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 AC007967.2-201ENST00000432613 625 ntBASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 AC009947.1-201ENST00000444350 727 ntBASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 PGAM5P1-201ENST00000518923 814 ntBASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
TBC1D3FA6NER0 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 NCF1C-201ENST00000438382 1427 ntBASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 MIR1233-2-201ENST00000408138 82 ntBASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 MIR1233-1-201ENST00000408722 82 ntBASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 RNA5SP416-201ENST00000516838 111 ntBASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.5■□□□□ 0.39
TBC1D3FA6NER0 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms