Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 NCF1C-201ENST00000438382 1427 ntBASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 UNC93B6-202ENST00000528242 690 ntBASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 AC034105.1-201ENST00000563488 319 ntBASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 LINC01451-201ENST00000623792 534 ntBASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.84■□□□□ 0.61
SMIM28A0A1B0GU29 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
SMIM28A0A1B0GU29 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.83■□□□□ 0.61
SMIM28A0A1B0GU29 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
SMIM28A0A1B0GU29 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.83■□□□□ 0.61
SMIM28A0A1B0GU29 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.83■□□□□ 0.61
SMIM28A0A1B0GU29 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SMIM28A0A1B0GU29 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
SMIM28A0A1B0GU29 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.83■□□□□ 0.61
SMIM28A0A1B0GU29 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.83■□□□□ 0.61
SMIM28A0A1B0GU29 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SMIM28A0A1B0GU29 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
SMIM28A0A1B0GU29 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SMIM28A0A1B0GU29 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
SMIM28A0A1B0GU29 AC097637.2-201ENST00000624096 1997 ntBASIC18.83■□□□□ 0.61
SMIM28A0A1B0GU29 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 AC136632.2-201ENST00000512891 861 ntBASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 KRT18P58-201ENST00000527480 1120 ntBASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 Z83851.2-201ENST00000609564 659 ntBASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 MIR1199-201ENST00000621445 119 ntBASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 AC006504.4-201ENST00000592118 1568 ntBASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMIM28A0A1B0GU29 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 LINC00304-203ENST00000565008 1864 ntBASIC18.82■□□□□ 0.6
SMIM28A0A1B0GU29 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMIM28A0A1B0GU29 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms