Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 AC010947.1-201ENST00000623454 693 ntBASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SMARCAL1Q9NZC9 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
SMARCAL1Q9NZC9 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SMARCAL1Q9NZC9 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SMARCAL1Q9NZC9 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SMARCAL1Q9NZC9 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SMARCAL1Q9NZC9 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SMARCAL1Q9NZC9 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 TSPY14P-201ENST00000303979 915 ntBASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 EGLN1P1-201ENST00000531623 762 ntBASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 AL157888.1-201ENST00000631930 593 ntBASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.58■□□□□ 0.56
SMARCAL1Q9NZC9 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 LINC02199-201ENST00000506655 2702 ntBASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 MIR3917-201ENST00000580971 93 ntBASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 AC092171.3-201ENST00000610122 2651 ntBASIC18.57■□□□□ 0.56
SMARCAL1Q9NZC9 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.56■□□□□ 0.56
SMARCAL1Q9NZC9 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms