Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 MYCLP1-201ENST00000372451 1075 ntBASIC17.57■□□□□ 0.4
TREX1Q9NSU2 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 TPSP2-201ENST00000561760 610 ntBASIC17.57■□□□□ 0.4
TREX1Q9NSU2 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 PRORSD1P-202ENST00000563365 2154 ntBASIC17.56■□□□□ 0.4
TREX1Q9NSU2 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 AC233702.3-201ENST00000578656 1387 ntBASIC17.56■□□□□ 0.4
TREX1Q9NSU2 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 AC103564.2-201ENST00000432853 1299 ntBASIC17.56■□□□□ 0.4
TREX1Q9NSU2 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 VENTXP7-201ENST00000475503 772 ntBASIC17.56■□□□□ 0.4
TREX1Q9NSU2 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 AC009533.2-201ENST00000543664 586 ntBASIC17.56■□□□□ 0.4
TREX1Q9NSU2 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TREX1Q9NSU2 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 KRT18P1-202ENST00000452408 1331 ntBASIC17.55■□□□□ 0.4
TREX1Q9NSU2 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 SLC25A1P3-201ENST00000395415 828 ntBASIC17.55■□□□□ 0.4
TREX1Q9NSU2 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 IGHV3-52-201ENST00000519770 353 ntBASIC17.55■□□□□ 0.4
TREX1Q9NSU2 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 AC011467.2-201ENST00000598425 242 ntBASIC17.55■□□□□ 0.4
TREX1Q9NSU2 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TREX1Q9NSU2 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms