Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC20.7■□□□□ 0.91
DDX4Q9NQI0 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
DDX4Q9NQI0 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
DDX4Q9NQI0 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
DDX4Q9NQI0 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
DDX4Q9NQI0 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
DDX4Q9NQI0 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.7■□□□□ 0.9
DDX4Q9NQI0 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
DDX4Q9NQI0 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC20.7■□□□□ 0.9
DDX4Q9NQI0 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.7■□□□□ 0.9
DDX4Q9NQI0 MYCLP1-201ENST00000372451 1075 ntBASIC20.7■□□□□ 0.9
DDX4Q9NQI0 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.7■□□□□ 0.9
DDX4Q9NQI0 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC20.7■□□□□ 0.9
DDX4Q9NQI0 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.7■□□□□ 0.9
DDX4Q9NQI0 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC20.7■□□□□ 0.9
DDX4Q9NQI0 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
DDX4Q9NQI0 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
DDX4Q9NQI0 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
DDX4Q9NQI0 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
DDX4Q9NQI0 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
DDX4Q9NQI0 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
DDX4Q9NQI0 BICD1-207ENST00000551848 1962 ntBASIC20.7■□□□□ 0.9
DDX4Q9NQI0 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.7■□□□□ 0.9
DDX4Q9NQI0 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 AP002414.1-201ENST00000391405 1147 ntBASIC20.69■□□□□ 0.9
DDX4Q9NQI0 URGCP-206ENST00000446958 365 ntTSL 2 BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 DNAJB3-202ENST00000449667 1266 ntBASIC20.69■□□□□ 0.9
DDX4Q9NQI0 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 AC010654.1-201ENST00000615722 808 ntBASIC20.69■□□□□ 0.9
DDX4Q9NQI0 AC010507.1-201ENST00000633895 436 ntBASIC20.69■□□□□ 0.9
DDX4Q9NQI0 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.69■□□□□ 0.9
DDX4Q9NQI0 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 MRPL20P1-201ENST00000400819 433 ntBASIC20.68■□□□□ 0.9
DDX4Q9NQI0 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 YBX1P5-201ENST00000509441 847 ntBASIC20.68■□□□□ 0.9
DDX4Q9NQI0 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 AL590787.1-201ENST00000568856 1315 ntBASIC20.68■□□□□ 0.9
DDX4Q9NQI0 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DDX4Q9NQI0 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 ABALON-201ENST00000629058 1903 ntBASIC20.67■□□□□ 0.9
DDX4Q9NQI0 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.67■□□□□ 0.9
DDX4Q9NQI0 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms