Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC24.62■■□□□ 1.532e-11■■□□□ 12
UPF1Q92900 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.753e-8■■□□□ 12
UPF1Q92900 CYP20A1-210ENST00000613925 1986 ntTSL 2 BASIC16.84■□□□□ 0.293e-8■■□□□ 12
UPF1Q92900 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.833e-8■■□□□ 12
UPF1Q92900 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.352e-6■■□□□ 12
UPF1Q92900 CPSF7-213ENST00000494016 656 ntTSL 29.65□□□□□ -0.863e-8■■□□□ 12
UPF1Q92900 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC21.74■■□□□ 1.078e-37■■□□□ 12
UPF1Q92900 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.728e-37■■□□□ 12
UPF1Q92900 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC15.67■□□□□ 0.18e-37■■□□□ 12
UPF1Q92900 PTGES3-206ENST00000537473 2939 ntTSL 213.78□□□□□ -0.28e-37■■□□□ 12
UPF1Q92900 SERF2-207ENST00000409614 582 ntTSL 2 BASIC27.9■■■□□ 2.066e-17■■□□□ 12
UPF1Q92900 SERF2-205ENST00000403425 690 ntTSL 2 BASIC17.74■□□□□ 0.436e-17■■□□□ 12
UPF1Q92900 SERF2-210ENST00000409960 1032 ntTSL 1 (best) BASIC17.7■□□□□ 0.426e-17■■□□□ 12
UPF1Q92900 SERF2-216ENST00000486144 1030 ntTSL 217.7■□□□□ 0.426e-17■■□□□ 12
UPF1Q92900 SERF2-204ENST00000402131 586 ntTSL 2 BASIC17.27■□□□□ 0.366e-17■■□□□ 12
UPF1Q92900 SERF2-202ENST00000339624 506 ntTSL 2 BASIC16.9■□□□□ 0.36e-17■■□□□ 12
UPF1Q92900 RBMX-202ENST00000419968 940 ntTSL 513.51□□□□□ -0.251e-11■■□□□ 12
UPF1Q92900 UROD-210ENST00000466193 524 ntTSL 224.94■■□□□ 1.587e-7■■□□□ 12
UPF1Q92900 UROD-209ENST00000465678 756 ntTSL 218.12■□□□□ 0.497e-7■■□□□ 12
UPF1Q92900 UROD-212ENST00000472254 934 ntTSL 217.36■□□□□ 0.377e-7■■□□□ 12
UPF1Q92900 EIF1-202ENST00000462917 2170 ntTSL 1 (best)21.03■□□□□ 0.963e-20■■□□□ 12
UPF1Q92900 EIF1-201ENST00000310837 1120 ntTSL 1 (best)12.66□□□□□ -0.383e-20■■□□□ 12
UPF1Q92900 EIF1-205ENST00000482111 1428 ntTSL 210.16□□□□□ -0.783e-20■■□□□ 12
UPF1Q92900 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.973e-20■■□□□ 12
UPF1Q92900 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.655e-7■■□□□ 12
UPF1Q92900 BAZ2A-201ENST00000379441 8831 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.631e-8■■□□□ 12
UPF1Q92900 BAZ2A-214ENST00000551812 8600 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.821e-8■■□□□ 12
UPF1Q92900 SCAMP2-211ENST00000569251 867 ntTSL 218.81■□□□□ 0.61e-8■■□□□ 12
UPF1Q92900 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.866e-10■■□□□ 12
UPF1Q92900 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC24.7■■□□□ 1.546e-8■■□□□ 12
UPF1Q92900 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.396e-10■■□□□ 12
UPF1Q92900 VPS4A-202ENST00000562754 633 ntTSL 221.28■■□□□ 13e-6■■□□□ 12
UPF1Q92900 AC026464.4-201ENST00000570054 1284 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.33e-6■■□□□ 12
UPF1Q92900 ZNF444-204ENST00000587236 5565 ntTSL 215.94■□□□□ 0.146e-10■■□□□ 12
UPF1Q92900 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.166e-8■■□□□ 12
UPF1Q92900 ZNF655-204ENST00000394163 4528 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.296e-8■■□□□ 12
UPF1Q92900 VPS4A-203ENST00000564399 471 ntTSL 511.56□□□□□ -0.563e-6■■□□□ 12
UPF1Q92900 ZNF655-213ENST00000425063 4624 ntTSL 3 BASIC9.84□□□□□ -0.836e-8■■□□□ 12
UPF1Q92900 ZNF655-224ENST00000494357 4886 ntTSL 28.29□□□□□ -1.086e-8■■□□□ 12
UPF1Q92900 ZNF655-207ENST00000419215 4346 ntTSL 1 (best)8.02□□□□□ -1.136e-8■■□□□ 12
UPF1Q92900 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC7.82□□□□□ -1.163e-7■■□□□ 11.9
UPF1Q92900 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.423e-10■■□□□ 11.9
UPF1Q92900 CRELD1-205ENST00000435417 966 ntTSL 520.35■□□□□ 0.853e-10■■□□□ 11.9
UPF1Q92900 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC19.48■□□□□ 0.713e-10■■□□□ 11.9
UPF1Q92900 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.73e-10■■□□□ 11.9
UPF1Q92900 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.043e-10■■□□□ 11.9
UPF1Q92900 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.181e-6■■□□□ 11.9
UPF1Q92900 MED20-206ENST00000467535 2602 ntTSL 212.93□□□□□ -0.341e-6■■□□□ 11.9
UPF1Q92900 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.82e-6■■□□□ 11.9
UPF1Q92900 MRS2-206ENST00000483634 1750 ntTSL 219.25■□□□□ 0.672e-6■■□□□ 11.9
UPF1Q92900 MRS2-205ENST00000446191 546 ntTSL 318.91■□□□□ 0.622e-6■■□□□ 11.9
UPF1Q92900 MRS2-203ENST00000378386 3313 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.552e-6■■□□□ 11.9
UPF1Q92900 MRS2-201ENST00000274747 3821 ntAPPRIS ALT2 TSL 2 BASIC10.57□□□□□ -0.722e-6■■□□□ 11.9
UPF1Q92900 MRS2-204ENST00000443868 3980 ntAPPRIS ALT2 TSL 2 BASIC10.36□□□□□ -0.752e-6■■□□□ 11.9
UPF1Q92900 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.735e-8■■□□□ 11.9
UPF1Q92900 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC27.17■■□□□ 1.945e-8■■□□□ 11.9
UPF1Q92900 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC29.83■■■□□ 2.373e-6■■□□□ 11.9
UPF1Q92900 MPZ-205ENST00000526189 957 ntTSL 327.26■■□□□ 1.953e-6■■□□□ 11.9
UPF1Q92900 MPZ-202ENST00000476410 878 ntTSL 325.93■■□□□ 1.743e-6■■□□□ 11.9
UPF1Q92900 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.63e-9■■□□□ 11.9
UPF1Q92900 FAM234A-206ENST00000420046 1006 ntTSL 521.05■□□□□ 0.963e-6■■□□□ 11.9
UPF1Q92900 FAM234A-215ENST00000468354 462 ntTSL 321.05■□□□□ 0.963e-6■■□□□ 11.9
UPF1Q92900 FAM234A-213ENST00000449945 887 ntTSL 520.86■□□□□ 0.933e-6■■□□□ 11.9
UPF1Q92900 FAM234A-214ENST00000453430 984 ntTSL 520.76■□□□□ 0.913e-6■■□□□ 11.9
UPF1Q92900 MPZ-203ENST00000488271 366 ntTSL 220.57■□□□□ 0.883e-6■■□□□ 11.9
UPF1Q92900 PLPP3-204ENST00000472957 696 ntTSL 418.49■□□□□ 0.553e-6■■□□□ 11.9
UPF1Q92900 MPZ-201ENST00000463290 1693 ntTSL 1 (best)17.32■□□□□ 0.363e-9■■□□□ 11.9
UPF1Q92900 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC16.76■□□□□ 0.273e-9■■□□□ 11.9
UPF1Q92900 PLIN2-205ENST00000464326 790 ntTSL 213.39□□□□□ -0.273e-6■■□□□ 11.9
UPF1Q92900 DCDC2-202ENST00000378454 4707 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.373e-6■■□□□ 11.9
UPF1Q92900 AKAP2-202ENST00000374525 6866 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.773e-6■■□□□ 11.9
UPF1Q92900 PALM2-AKAP2-202ENST00000374530 7507 ntTSL 2 BASIC9.58□□□□□ -0.883e-6■■□□□ 11.9
UPF1Q92900 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC7.5□□□□□ -1.213e-6■■□□□ 11.9
UPF1Q92900 CPSF7-206ENST00000448745 1749 ntAPPRIS ALT1 TSL 5 BASIC9.9□□□□□ -0.833e-8■■□□□ 11.9
UPF1Q92900 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC28.25■■■□□ 2.112e-7■■□□□ 11.9
UPF1Q92900 BLOC1S6-205ENST00000564310 636 ntTSL 312.36□□□□□ -0.432e-7■■□□□ 11.9
UPF1Q92900 BLOC1S6-201ENST00000220531 4037 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.762e-7■■□□□ 11.9
UPF1Q92900 BLOC1S6-218ENST00000568816 4013 ntTSL 2 BASIC9.35□□□□□ -0.912e-7■■□□□ 11.9
UPF1Q92900 BCL2L13-210ENST00000485631 1110 ntTSL 219.78■□□□□ 0.768e-13■■□□□ 11.9
UPF1Q92900 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 02e-7■■□□□ 11.9
UPF1Q92900 CEBPZOS-207ENST00000470216 800 ntTSL 514.26□□□□□ -0.132e-7■■□□□ 11.9
UPF1Q92900 AC016723.1-202ENST00000436982 643 ntTSL 5 BASIC13.33□□□□□ -0.281e-10■■□□□ 11.9
UPF1Q92900 FRRS1-201ENST00000287474 2678 ntAPPRIS P1 TSL 2 BASIC9.28□□□□□ -0.922e-6■■□□□ 11.8
UPF1Q92900 HK1-207ENST00000450646 739 ntTSL 57.24□□□□□ -1.251e-9■■□□□ 11.8
UPF1Q92900 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC22.59■■□□□ 1.212e-7■■□□□ 11.8
UPF1Q92900 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.273e-7■■□□□ 11.8
UPF1Q92900 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.023e-7■■□□□ 11.8
UPF1Q92900 SPDYA-205ENST00000462832 2081 ntTSL 25.95□□□□□ -1.463e-7■■□□□ 11.8
UPF1Q92900 TTLL4-216ENST00000472527 544 ntTSL 27.79□□□□□ -1.164e-11■■□□□ 11.8
UPF1Q92900 ZNF595-203ENST00000608255 1999 ntTSL 2 BASIC16.49■□□□□ 0.234e-18■■□□□ 11.8
UPF1Q92900 ZNF595-205ENST00000610261 2911 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.354e-18■■□□□ 11.8
UPF1Q92900 ZNF595-204ENST00000609518 2115 ntAPPRIS ALT2 TSL 2 BASIC8.63□□□□□ -1.034e-18■■□□□ 11.8
UPF1Q92900 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.551e-7■■□□□ 11.8
UPF1Q92900 SPN-204ENST00000561857 2077 nt11.89□□□□□ -0.511e-8■■□□□ 11.8
UPF1Q92900 SS18-203ENST00000415083 3414 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.874e-7■■□□□ 11.8
UPF1Q92900 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC25.46■■□□□ 1.677e-7■■□□□ 11.8
UPF1Q92900 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.577e-7■■□□□ 11.8
UPF1Q92900 IL4R-213ENST00000565352 424 ntTSL 516.83■□□□□ 0.283e-9■■□□□ 11.8
UPF1Q92900 IL4R-203ENST00000543915 3539 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.563e-9■■□□□ 11.8
UPF1Q92900 IL4R-201ENST00000170630 3380 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.613e-9■■□□□ 11.8
Retrieved 100 of 15,879 protein–RNA pairs in 89.3 ms