RNA–Protein interactions for RNA: ENST00000494016.1

CPSF7-213, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 2

Gene CPSF7, Length 656 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-213ENST00000494016 AEBP2Q6ZN18 517 aaPredicted RBP22.11■■□□□ 1.13
CPSF7-213ENST00000494016 CHIC1Q5VXU3 224 aa20.72■□□□□ 0.91
CPSF7-213ENST00000494016 SENP3Q9H4L4 574 aaPredicted RBP19.01■□□□□ 0.63
CPSF7-213ENST00000494016 PHF23Q9BUL5 403 aaPredicted RBP18.67■□□□□ 0.58
CPSF7-213ENST00000494016 FOXD1Q16676 465 aa17.78■□□□□ 0.44
CPSF7-213ENST00000494016 POTEDQ86YR6 584 aa17.61■□□□□ 0.41
CPSF7-213ENST00000494016 MSH5O43196 834 aa16.92■□□□□ 0.3
CPSF7-213ENST00000494016 PLPPR3Q6T4P5 718 aa16.82■□□□□ 0.28
CPSF7-213ENST00000494016 PIAS4Q8N2W9 510 aaPredicted RBP16.49■□□□□ 0.23
CPSF7-213ENST00000494016 PPP6R1Q9UPN7 881 aa16.22■□□□□ 0.19
CPSF7-213ENST00000494016 ADRA2BP18089 450 aa16.17■□□□□ 0.18
CPSF7-213ENST00000494016 MAPK8IP2Q13387 824 aaPredicted RBP15□□□□□ -0.01
CPSF7-213ENST00000494016 CACNB1Q02641 598 aaPredicted RBP14.96□□□□□ -0.01
CPSF7-213ENST00000494016 DMRT2Q9Y5R5 561 aa14.95□□□□□ -0.02
CPSF7-213ENST00000494016 PPP4R3CPQ6ZMV5 832 aa14.82□□□□□ -0.04
CPSF7-213ENST00000494016 SCAF1Q9H7N4 1312 aaKnown RBP14.81□□□□□ -0.04
CPSF7-213ENST00000494016 KCNA4P22459 653 aa14.49□□□□□ -0.09
CPSF7-213ENST00000494016 DCAF8L1A6NGE4 600 aa14.48□□□□□ -0.09
CPSF7-213ENST00000494016 NCBP3Q53F19 620 aaKnown RBP14.44□□□□□ -0.1
CPSF7-213ENST00000494016 CNKSR2Q8WXI2 1034 aa14.41□□□□□ -0.1
CPSF7-213ENST00000494016 RNF39Q9H2S5 420 aa14.34□□□□□ -0.11
CPSF7-213ENST00000494016 NPM3O75607 178 aaKnown RBP14.23□□□□□ -0.13
CPSF7-213ENST00000494016 HOXD11P31277 338 aaPredicted RBP14.19□□□□□ -0.14
CPSF7-213ENST00000494016 RNF216Q9NWF9 866 aaPredicted RBP14.13□□□□□ -0.15
CPSF7-213ENST00000494016 C1QBPQ07021 282 aaKnown RBP14.12□□□□□ -0.15
CPSF7-213ENST00000494016 DNAJC5BQ9UF47 199 aa13.88□□□□□ -0.19
CPSF7-213ENST00000494016 SLC4A1APQ9BWU0 796 aaKnown RBP13.8□□□□□ -0.2
CPSF7-213ENST00000494016 POTEHQ6S545 545 aa13.68□□□□□ -0.22
CPSF7-213ENST00000494016 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.62□□□□□ -0.23
CPSF7-213ENST00000494016 SLC4A2P04920 1241 aa13.44□□□□□ -0.26
CPSF7-213ENST00000494016 EHMT2Q96KQ7 1210 aa13.39□□□□□ -0.27
CPSF7-213ENST00000494016 ZBTB22O15209 634 aa13.34□□□□□ -0.27
CPSF7-213ENST00000494016 FOXD4L1Q9NU39 408 aa13.34□□□□□ -0.27
CPSF7-213ENST00000494016 CSRNP3Q8WYN3 585 aa13.28□□□□□ -0.28
CPSF7-213ENST00000494016 CAPN15O75808 1086 aa13.24□□□□□ -0.29
CPSF7-213ENST00000494016 DSG3P32926 999 aa13.22□□□□□ -0.29
CPSF7-213ENST00000494016 U3KPZ7 1027 aaPredicted RBP13.21□□□□□ -0.29
CPSF7-213ENST00000494016 SPINK5Q9NQ38 1064 aaPredicted RBP13.19□□□□□ -0.3
CPSF7-213ENST00000494016 MYCNP04198 464 aaPredicted RBP13.15□□□□□ -0.3
CPSF7-213ENST00000494016 NISCHQ9Y2I1 1504 aa13.05□□□□□ -0.32
CPSF7-213ENST00000494016 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.02□□□□□ -0.33
CPSF7-213ENST00000494016 HNRNPUL2Q1KMD3 747 aaKnown RBP13.02□□□□□ -0.33
CPSF7-213ENST00000494016 SAMD1Q6SPF0 538 aaPredicted RBP12.97□□□□□ -0.33
CPSF7-213ENST00000494016 TRHP20396 242 aaPredicted RBP12.92□□□□□ -0.34
CPSF7-213ENST00000494016 ATXN8OSP0DMR3 200 aa12.9□□□□□ -0.34
CPSF7-213ENST00000494016 ABCB7O75027 752 aa12.89□□□□□ -0.35
CPSF7-213ENST00000494016 APLP2Q06481 763 aa12.88□□□□□ -0.35
CPSF7-213ENST00000494016 ZNF219Q9P2Y4 722 aaPredicted RBP12.82□□□□□ -0.36
CPSF7-213ENST00000494016 ATF5Q9Y2D1 282 aaPredicted RBP12.79□□□□□ -0.36
CPSF7-213ENST00000494016 RBM42Q9BTD8 480 aaKnown RBP12.67□□□□□ -0.38
CPSF7-213ENST00000494016 CHRDL2Q6WN34 429 aa12.63□□□□□ -0.39
CPSF7-213ENST00000494016 SP7Q8TDD2 431 aaPredicted RBP12.52□□□□□ -0.41
CPSF7-213ENST00000494016 POLA2Q14181 598 aa12.49□□□□□ -0.41
CPSF7-213ENST00000494016 ZBTB12Q9Y330 459 aaPredicted RBP12.3□□□□□ -0.44
CPSF7-213ENST00000494016 FBLN2P98095 1184 aa12.25□□□□□ -0.45
CPSF7-213ENST00000494016 MKRN4PQ13434 485 aaPredicted RBP12.25□□□□□ -0.45
CPSF7-213ENST00000494016 AKT1S1Q96B36 256 aa12.23□□□□□ -0.45
CPSF7-213ENST00000494016 HAX1O00165 279 aa12.2□□□□□ -0.46
CPSF7-213ENST00000494016 PIP4P2Q8N4L2 257 aa12.18□□□□□ -0.46
CPSF7-213ENST00000494016 REM2Q8IYK8 340 aaPredicted RBP12.12□□□□□ -0.47
CPSF7-213ENST00000494016 OSCARQ8IYS5 282 aa12.06□□□□□ -0.48
CPSF7-213ENST00000494016 PITPNM1O00562 1244 aa12□□□□□ -0.49
CPSF7-213ENST00000494016 FXR2P51116 673 aaKnown RBP eCLIP12□□□□□ -0.49
CPSF7-213ENST00000494016 FKBP8Q14318 412 aa11.98□□□□□ -0.49
CPSF7-213ENST00000494016 SPDYE2BA6NHP3 402 aa11.97□□□□□ -0.49
CPSF7-213ENST00000494016 SPDYE6P0CI01 402 aa11.97□□□□□ -0.49
CPSF7-213ENST00000494016 SPDYE2Q495Y8 402 aa11.97□□□□□ -0.49
CPSF7-213ENST00000494016 SPDYE4A6NLX3 237 aa11.96□□□□□ -0.49
CPSF7-213ENST00000494016 EVX2Q03828 476 aa11.92□□□□□ -0.5
CPSF7-213ENST00000494016 ZNF692Q9BU19 519 aaPredicted RBP11.91□□□□□ -0.5
CPSF7-213ENST00000494016 SSUH2Q9Y2M2 353 aa11.89□□□□□ -0.51
CPSF7-213ENST00000494016 PROM2Q8N271 834 aa11.81□□□□□ -0.52
CPSF7-213ENST00000494016 LHX8Q68G74 356 aa11.75□□□□□ -0.53
CPSF7-213ENST00000494016 PABPN1Q86U42 306 aaKnown RBP eCLIP11.75□□□□□ -0.53
CPSF7-213ENST00000494016 PRKAR2AP13861 404 aaKnown RBP11.71□□□□□ -0.53
CPSF7-213ENST00000494016 CLEC11AQ9Y240 323 aa11.7□□□□□ -0.54
CPSF7-213ENST00000494016 GABBR2O75899 941 aa11.65□□□□□ -0.54
CPSF7-213ENST00000494016 C19orf67A6NJJ6 358 aa11.63□□□□□ -0.55
CPSF7-213ENST00000494016 SPDYE1Q8NFV5 336 aaPredicted RBP11.63□□□□□ -0.55
CPSF7-213ENST00000494016 PLSCR2Q9NRY7 297 aa11.6□□□□□ -0.55
CPSF7-213ENST00000494016 STAG3Q9UJ98 1225 aa11.58□□□□□ -0.56
CPSF7-213ENST00000494016 CCDC180Q9P1Z9 1646 aa11.57□□□□□ -0.56
CPSF7-213ENST00000494016 FBXO3Q9UK99 471 aa11.57□□□□□ -0.56
CPSF7-213ENST00000494016 CHADLQ6NUI6 762 aa11.49□□□□□ -0.57
CPSF7-213ENST00000494016 ABCC9O60706 1549 aa11.45□□□□□ -0.58
CPSF7-213ENST00000494016 PRR29P0C7W0 189 aa11.44□□□□□ -0.58
CPSF7-213ENST00000494016 VASPP50552 380 aaPredicted RBP11.41□□□□□ -0.58
CPSF7-213ENST00000494016 POTEIP0CG38 1075 aa11.36□□□□□ -0.59
CPSF7-213ENST00000494016 MIER1Q8N108 512 aa11.33□□□□□ -0.6
CPSF7-213ENST00000494016 CREBZFQ9NS37 354 aa11.32□□□□□ -0.6
CPSF7-213ENST00000494016 CD44P16070 742 aaKnown RBP11.31□□□□□ -0.6
CPSF7-213ENST00000494016 PLCD3Q8N3E9 789 aa11.31□□□□□ -0.6
CPSF7-213ENST00000494016 PLEKHG5O94827 1062 aa11.27□□□□□ -0.61
CPSF7-213ENST00000494016 CLCN6P51797 869 aa11.25□□□□□ -0.61
CPSF7-213ENST00000494016 IFNLR1Q8IU57 520 aaPredicted RBP11.25□□□□□ -0.61
CPSF7-213ENST00000494016 DCBLD2Q96PD2 775 aa11.25□□□□□ -0.61
CPSF7-213ENST00000494016 FARP1Q9Y4F1 1045 aaPredicted RBP11.25□□□□□ -0.61
CPSF7-213ENST00000494016 MNX1P50219 401 aaPredicted RBP11.22□□□□□ -0.61
CPSF7-213ENST00000494016 ZBTB47Q9UFB7 747 aaPredicted RBP11.21□□□□□ -0.61
CPSF7-213ENST00000494016 KLHL34Q8N239 644 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms