Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 BX276092.7-203ENST00000637198 1536 ntBASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 AL020989.1-201ENST00000422979 469 ntBASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 AC109462.3-201ENST00000573934 613 ntBASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.67■□□□□ 0.42
HDDC3Q8N4P3 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 AC132938.5-201ENST00000624980 1813 ntBASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 AC104581.1-202ENST00000635932 2618 ntBASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 DDX43P3-201ENST00000441064 443 ntBASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.66■□□□□ 0.42
HDDC3Q8N4P3 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 KLF4P1-201ENST00000412782 1185 ntBASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 AC004832.2-201ENST00000426397 482 ntBASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 AC006557.2-201ENST00000592985 1240 ntBASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 AC019129.2-201ENST00000609837 1235 ntBASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
HDDC3Q8N4P3 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
HDDC3Q8N4P3 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms