Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
CKS1BP61024 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC12.41□□□□□ -0.42
CKS1BP61024 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC12.41□□□□□ -0.42
CKS1BP61024 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
CKS1BP61024 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC12.41□□□□□ -0.42
CKS1BP61024 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC12.41□□□□□ -0.42
CKS1BP61024 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC12.41□□□□□ -0.42
CKS1BP61024 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
CKS1BP61024 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC12.41□□□□□ -0.42
CKS1BP61024 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC12.41□□□□□ -0.42
CKS1BP61024 KRT17P3-201ENST00000420566 1262 ntBASIC12.41□□□□□ -0.42
CKS1BP61024 GUSBP6-202ENST00000438529 1198 ntBASIC12.41□□□□□ -0.42
CKS1BP61024 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC12.41□□□□□ -0.42
CKS1BP61024 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC12.41□□□□□ -0.42
CKS1BP61024 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC12.41□□□□□ -0.42
CKS1BP61024 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC12.41□□□□□ -0.42
CKS1BP61024 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC12.41□□□□□ -0.42
CKS1BP61024 Six3os1_6.1-201ENST00000620790 196 ntBASIC12.41□□□□□ -0.42
CKS1BP61024 AC131212.4-201ENST00000623606 975 ntBASIC12.41□□□□□ -0.42
CKS1BP61024 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC12.41□□□□□ -0.42
CKS1BP61024 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
CKS1BP61024 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC12.41□□□□□ -0.42
CKS1BP61024 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 PRAL-201ENST00000624952 3286 ntBASIC12.41□□□□□ -0.42
CKS1BP61024 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 MTMR9LP-203ENST00000426597 1545 ntBASIC12.41□□□□□ -0.42
CKS1BP61024 KRT8P41-201ENST00000533985 1514 ntBASIC12.41□□□□□ -0.42
CKS1BP61024 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC12.41□□□□□ -0.42
CKS1BP61024 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC12.41□□□□□ -0.42
CKS1BP61024 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
CKS1BP61024 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC12.41□□□□□ -0.42
CKS1BP61024 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC12.41□□□□□ -0.42
CKS1BP61024 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC12.4□□□□□ -0.42
CKS1BP61024 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
CKS1BP61024 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC12.4□□□□□ -0.42
CKS1BP61024 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
CKS1BP61024 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC12.4□□□□□ -0.42
CKS1BP61024 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC12.4□□□□□ -0.42
CKS1BP61024 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
CKS1BP61024 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
CKS1BP61024 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC12.4□□□□□ -0.42
CKS1BP61024 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
CKS1BP61024 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC12.4□□□□□ -0.42
CKS1BP61024 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC12.4□□□□□ -0.42
CKS1BP61024 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC12.4□□□□□ -0.42
CKS1BP61024 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC12.4□□□□□ -0.42
CKS1BP61024 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC12.4□□□□□ -0.42
CKS1BP61024 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
CKS1BP61024 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC12.4□□□□□ -0.42
CKS1BP61024 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
CKS1BP61024 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC12.4□□□□□ -0.42
CKS1BP61024 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC12.4□□□□□ -0.42
CKS1BP61024 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
CKS1BP61024 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
CKS1BP61024 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC12.4□□□□□ -0.42
CKS1BP61024 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC12.4□□□□□ -0.42
CKS1BP61024 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CKS1BP61024 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.43
CKS1BP61024 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
CKS1BP61024 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC12.4□□□□□ -0.43
CKS1BP61024 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
CKS1BP61024 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC12.4□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms