Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CDX1P47902 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CDX1P47902 CROCCP1-201ENST00000426910 5675 ntBASIC14.46□□□□□ -0.1
CDX1P47902 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
CDX1P47902 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC14.46□□□□□ -0.1
CDX1P47902 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
CDX1P47902 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
CDX1P47902 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.1
CDX1P47902 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CDX1P47902 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CDX1P47902 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.1
CDX1P47902 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CDX1P47902 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
CDX1P47902 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.46□□□□□ -0.1
CDX1P47902 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CDX1P47902 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CDX1P47902 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CDX1P47902 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CDX1P47902 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC14.45□□□□□ -0.1
CDX1P47902 AC034236.2-201ENST00000606662 1610 ntBASIC14.45□□□□□ -0.1
CDX1P47902 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.45□□□□□ -0.1
CDX1P47902 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CDX1P47902 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC14.45□□□□□ -0.1
CDX1P47902 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 AC112907.2-201ENST00000448639 330 ntBASIC14.45□□□□□ -0.1
CDX1P47902 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC14.45□□□□□ -0.1
CDX1P47902 LY6E-213ENST00000522528 606 ntTSL 3 BASIC14.45□□□□□ -0.1
CDX1P47902 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC14.45□□□□□ -0.1
CDX1P47902 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC14.45□□□□□ -0.1
CDX1P47902 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CDX1P47902 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC14.45□□□□□ -0.1
CDX1P47902 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC14.45□□□□□ -0.1
CDX1P47902 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CDX1P47902 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CDX1P47902 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CDX1P47902 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC14.44□□□□□ -0.1
CDX1P47902 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC14.44□□□□□ -0.1
CDX1P47902 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CDX1P47902 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.44□□□□□ -0.1
CDX1P47902 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.44□□□□□ -0.1
CDX1P47902 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.44□□□□□ -0.1
CDX1P47902 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC14.44□□□□□ -0.1
CDX1P47902 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CDX1P47902 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC14.44□□□□□ -0.1
CDX1P47902 KRT18P23-201ENST00000435622 1283 ntBASIC14.44□□□□□ -0.1
CDX1P47902 ELP6-205ENST00000439305 880 ntTSL 2 BASIC14.44□□□□□ -0.1
CDX1P47902 KRT18P38-201ENST00000449496 1282 ntBASIC14.44□□□□□ -0.1
CDX1P47902 RASA4DP-201ENST00000460726 1199 ntBASIC14.44□□□□□ -0.1
CDX1P47902 SEC1P-202ENST00000473944 940 ntBASIC14.44□□□□□ -0.1
CDX1P47902 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC14.44□□□□□ -0.1
CDX1P47902 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC14.44□□□□□ -0.1
CDX1P47902 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC14.44□□□□□ -0.1
CDX1P47902 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CDX1P47902 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.44□□□□□ -0.1
CDX1P47902 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC14.44□□□□□ -0.1
CDX1P47902 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
CDX1P47902 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CDX1P47902 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC14.44□□□□□ -0.1
CDX1P47902 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
CDX1P47902 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
CDX1P47902 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 124.8 ms