Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
VCANP13611 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VCANP13611 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VCANP13611 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VCANP13611 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC18.08■□□□□ 0.48
VCANP13611 HIST1H2BPS3-201ENST00000419683 341 ntBASIC18.08■□□□□ 0.48
VCANP13611 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC18.08■□□□□ 0.48
VCANP13611 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC18.08■□□□□ 0.48
VCANP13611 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.08■□□□□ 0.48
VCANP13611 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
VCANP13611 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
VCANP13611 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCANP13611 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCANP13611 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCANP13611 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.07■□□□□ 0.48
VCANP13611 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC18.07■□□□□ 0.48
VCANP13611 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.07■□□□□ 0.48
VCANP13611 AC112191.1-201ENST00000523689 701 ntBASIC18.07■□□□□ 0.48
VCANP13611 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC18.07■□□□□ 0.48
VCANP13611 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
VCANP13611 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCANP13611 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.07■□□□□ 0.48
VCANP13611 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCANP13611 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCANP13611 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCANP13611 MXI1-205ENST00000393134 889 ntTSL 2 BASIC18.07■□□□□ 0.48
VCANP13611 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.07■□□□□ 0.48
VCANP13611 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.07■□□□□ 0.48
VCANP13611 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.07■□□□□ 0.48
VCANP13611 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC18.07■□□□□ 0.48
VCANP13611 MIR6869-201ENST00000619434 62 ntBASIC18.07■□□□□ 0.48
VCANP13611 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCANP13611 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
VCANP13611 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCANP13611 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
VCANP13611 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCANP13611 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCANP13611 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCANP13611 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCANP13611 AL020989.1-201ENST00000422979 469 ntBASIC18.07■□□□□ 0.48
VCANP13611 RBPMS2P1-201ENST00000437762 623 ntBASIC18.07■□□□□ 0.48
VCANP13611 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VCANP13611 AC079140.1-201ENST00000508039 487 ntBASIC18.07■□□□□ 0.48
VCANP13611 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.07■□□□□ 0.48
VCANP13611 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC18.07■□□□□ 0.48
VCANP13611 AC026150.2-201ENST00000564693 1156 ntBASIC18.07■□□□□ 0.48
VCANP13611 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.07■□□□□ 0.48
VCANP13611 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCANP13611 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.06■□□□□ 0.48
VCANP13611 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCANP13611 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCANP13611 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VCANP13611 AL512638.1-201ENST00000457493 794 ntBASIC18.06■□□□□ 0.48
VCANP13611 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCANP13611 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCANP13611 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCANP13611 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCANP13611 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCANP13611 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
VCANP13611 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCANP13611 AC005237.2-201ENST00000434368 219 ntBASIC18.06■□□□□ 0.48
VCANP13611 KRT18P65-201ENST00000439811 1286 ntBASIC18.06■□□□□ 0.48
VCANP13611 FUZ-207ENST00000526575 482 ntTSL 4 BASIC18.06■□□□□ 0.48
VCANP13611 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC18.06■□□□□ 0.48
VCANP13611 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VCANP13611 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCANP13611 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCANP13611 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.05■□□□□ 0.48
VCANP13611 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.05■□□□□ 0.48
VCANP13611 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
VCANP13611 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.05■□□□□ 0.48
VCANP13611 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC18.05■□□□□ 0.48
VCANP13611 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.05■□□□□ 0.48
VCANP13611 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC18.05■□□□□ 0.48
VCANP13611 AC026120.1-201ENST00000611536 926 ntBASIC18.05■□□□□ 0.48
VCANP13611 PPA1-206ENST00000625364 644 ntTSL 5 BASIC18.05■□□□□ 0.48
VCANP13611 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCANP13611 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCANP13611 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCANP13611 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCANP13611 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCANP13611 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCANP13611 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCANP13611 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCANP13611 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.05■□□□□ 0.48
VCANP13611 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VCANP13611 AC009477.1-201ENST00000452936 217 ntBASIC18.05■□□□□ 0.48
VCANP13611 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCANP13611 IGHV3-42-201ENST00000520410 361 ntBASIC18.05■□□□□ 0.48
VCANP13611 GATD1-206ENST00000526325 756 ntTSL 5 BASIC18.05■□□□□ 0.48
VCANP13611 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.05■□□□□ 0.48
VCANP13611 PFAS-212ENST00000625942 396 ntTSL 5 BASIC18.05■□□□□ 0.48
VCANP13611 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
VCANP13611 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCANP13611 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
VCANP13611 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
VCANP13611 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCANP13611 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCANP13611 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VCANP13611 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms