Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCNAP12004 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCNAP12004 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.23■□□□□ 0.35
PCNAP12004 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
PCNAP12004 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
PCNAP12004 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
PCNAP12004 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.23■□□□□ 0.35
PCNAP12004 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCNAP12004 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.23■□□□□ 0.35
PCNAP12004 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.23■□□□□ 0.35
PCNAP12004 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.23■□□□□ 0.35
PCNAP12004 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.23■□□□□ 0.35
PCNAP12004 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.23■□□□□ 0.35
PCNAP12004 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.23■□□□□ 0.35
PCNAP12004 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.23■□□□□ 0.35
PCNAP12004 AC083849.1-201ENST00000615227 514 ntBASIC17.23■□□□□ 0.35
PCNAP12004 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
PCNAP12004 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PCNAP12004 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCNAP12004 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
PCNAP12004 AL353692.3-201ENST00000407031 1396 ntBASIC17.23■□□□□ 0.35
PCNAP12004 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PCNAP12004 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.23■□□□□ 0.35
PCNAP12004 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCNAP12004 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PCNAP12004 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCNAP12004 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCNAP12004 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCNAP12004 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PCNAP12004 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCNAP12004 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCNAP12004 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCNAP12004 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
PCNAP12004 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.22■□□□□ 0.35
PCNAP12004 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.22■□□□□ 0.35
PCNAP12004 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCNAP12004 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.22■□□□□ 0.35
PCNAP12004 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PCNAP12004 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCNAP12004 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.22■□□□□ 0.35
PCNAP12004 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
PCNAP12004 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.22■□□□□ 0.35
PCNAP12004 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCNAP12004 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.22■□□□□ 0.35
PCNAP12004 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.22■□□□□ 0.35
PCNAP12004 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.22■□□□□ 0.35
PCNAP12004 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.22■□□□□ 0.35
PCNAP12004 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.22■□□□□ 0.35
PCNAP12004 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCNAP12004 AC005332.3-201ENST00000589904 676 ntBASIC17.22■□□□□ 0.35
PCNAP12004 AC116407.2-201ENST00000613639 860 ntBASIC17.22■□□□□ 0.35
PCNAP12004 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.22■□□□□ 0.35
PCNAP12004 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.22■□□□□ 0.35
PCNAP12004 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCNAP12004 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCNAP12004 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCNAP12004 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCNAP12004 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCNAP12004 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PCNAP12004 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCNAP12004 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.22■□□□□ 0.35
PCNAP12004 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCNAP12004 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCNAP12004 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.22■□□□□ 0.35
PCNAP12004 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PCNAP12004 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCNAP12004 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
PCNAP12004 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCNAP12004 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCNAP12004 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.21■□□□□ 0.35
PCNAP12004 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCNAP12004 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.21■□□□□ 0.35
PCNAP12004 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCNAP12004 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCNAP12004 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.35
PCNAP12004 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
PCNAP12004 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.35
PCNAP12004 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
PCNAP12004 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCNAP12004 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCNAP12004 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.21■□□□□ 0.35
PCNAP12004 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCNAP12004 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCNAP12004 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCNAP12004 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCNAP12004 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCNAP12004 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.21■□□□□ 0.35
PCNAP12004 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.21■□□□□ 0.35
PCNAP12004 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCNAP12004 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
PCNAP12004 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.21■□□□□ 0.35
PCNAP12004 AL049597.2-201ENST00000565575 961 ntBASIC17.21■□□□□ 0.35
PCNAP12004 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.21■□□□□ 0.35
PCNAP12004 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.21■□□□□ 0.35
PCNAP12004 AC009154.2-201ENST00000621177 724 ntBASIC17.21■□□□□ 0.35
PCNAP12004 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCNAP12004 AC084018.2-201ENST00000613093 2607 ntBASIC17.21■□□□□ 0.35
PCNAP12004 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCNAP12004 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCNAP12004 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms