Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.06■□□□□ 0.16
SSX4O60224 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.06■□□□□ 0.16
SSX4O60224 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
SSX4O60224 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.06■□□□□ 0.16
SSX4O60224 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
SSX4O60224 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 AC005332.1-201ENST00000577698 1310 ntBASIC16.06■□□□□ 0.16
SSX4O60224 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.06■□□□□ 0.16
SSX4O60224 AC112907.2-201ENST00000448639 330 ntBASIC16.06■□□□□ 0.16
SSX4O60224 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.06■□□□□ 0.16
SSX4O60224 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.06■□□□□ 0.16
SSX4O60224 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.06■□□□□ 0.16
SSX4O60224 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.06■□□□□ 0.16
SSX4O60224 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
SSX4O60224 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
SSX4O60224 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
SSX4O60224 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.06■□□□□ 0.16
SSX4O60224 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
SSX4O60224 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
SSX4O60224 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
SSX4O60224 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
SSX4O60224 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.05■□□□□ 0.16
SSX4O60224 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.05■□□□□ 0.16
SSX4O60224 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
SSX4O60224 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.05■□□□□ 0.16
SSX4O60224 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SSX4O60224 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.05■□□□□ 0.16
SSX4O60224 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.05■□□□□ 0.16
SSX4O60224 KRT18P48-201ENST00000434763 852 ntBASIC16.05■□□□□ 0.16
SSX4O60224 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.05■□□□□ 0.16
SSX4O60224 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
SSX4O60224 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.05■□□□□ 0.16
SSX4O60224 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.05■□□□□ 0.16
SSX4O60224 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
SSX4O60224 NFIC-211ENST00000641145 8399 ntBASIC16.05■□□□□ 0.16
SSX4O60224 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SSX4O60224 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SSX4O60224 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
SSX4O60224 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSX4O60224 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSX4O60224 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SSX4O60224 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.04■□□□□ 0.16
SSX4O60224 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSX4O60224 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSX4O60224 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSX4O60224 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SSX4O60224 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SSX4O60224 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SSX4O60224 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.04■□□□□ 0.16
SSX4O60224 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SSX4O60224 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SSX4O60224 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.04■□□□□ 0.16
SSX4O60224 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SSX4O60224 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SSX4O60224 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.04■□□□□ 0.16
SSX4O60224 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.04■□□□□ 0.16
SSX4O60224 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.04■□□□□ 0.16
SSX4O60224 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.04■□□□□ 0.16
SSX4O60224 GCSHP2-201ENST00000560971 527 ntBASIC16.04■□□□□ 0.16
SSX4O60224 NEK4P2-201ENST00000580004 1012 ntBASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms