Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NPAS1Q99742 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NPAS1Q99742 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.11■□□□□ 0.17
NPAS1Q99742 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NPAS1Q99742 REXO1L11P-201ENST00000620964 1927 ntBASIC16.11■□□□□ 0.17
NPAS1Q99742 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NPAS1Q99742 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
NPAS1Q99742 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.11■□□□□ 0.17
NPAS1Q99742 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
NPAS1Q99742 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
NPAS1Q99742 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
NPAS1Q99742 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
NPAS1Q99742 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
NPAS1Q99742 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
NPAS1Q99742 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NPAS1Q99742 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NPAS1Q99742 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NPAS1Q99742 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.1■□□□□ 0.17
NPAS1Q99742 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NPAS1Q99742 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
NPAS1Q99742 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NPAS1Q99742 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NPAS1Q99742 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
NPAS1Q99742 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
NPAS1Q99742 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NPAS1Q99742 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NPAS1Q99742 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
NPAS1Q99742 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
NPAS1Q99742 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NPAS1Q99742 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
NPAS1Q99742 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NPAS1Q99742 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NPAS1Q99742 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
NPAS1Q99742 AC096633.1-201ENST00000422446 749 ntBASIC16.1■□□□□ 0.17
NPAS1Q99742 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.1■□□□□ 0.17
NPAS1Q99742 FOSL1P1-201ENST00000511041 816 ntBASIC16.1■□□□□ 0.17
NPAS1Q99742 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.1■□□□□ 0.17
NPAS1Q99742 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.1■□□□□ 0.17
NPAS1Q99742 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.1■□□□□ 0.17
NPAS1Q99742 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.1■□□□□ 0.17
NPAS1Q99742 HCG11-201ENST00000411553 5696 ntBASIC16.1■□□□□ 0.17
NPAS1Q99742 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NPAS1Q99742 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.1■□□□□ 0.17
NPAS1Q99742 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
NPAS1Q99742 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.1■□□□□ 0.17
NPAS1Q99742 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NPAS1Q99742 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
NPAS1Q99742 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.1■□□□□ 0.17
NPAS1Q99742 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.1■□□□□ 0.17
NPAS1Q99742 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
NPAS1Q99742 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
NPAS1Q99742 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
NPAS1Q99742 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.09■□□□□ 0.17
NPAS1Q99742 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.09■□□□□ 0.17
NPAS1Q99742 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.09■□□□□ 0.17
NPAS1Q99742 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
NPAS1Q99742 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NPAS1Q99742 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NPAS1Q99742 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.09■□□□□ 0.17
NPAS1Q99742 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NPAS1Q99742 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NPAS1Q99742 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.09■□□□□ 0.17
NPAS1Q99742 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NPAS1Q99742 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
NPAS1Q99742 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NPAS1Q99742 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
NPAS1Q99742 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
NPAS1Q99742 MINOS1P3-201ENST00000457048 203 ntBASIC16.09■□□□□ 0.17
NPAS1Q99742 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NPAS1Q99742 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.09■□□□□ 0.17
NPAS1Q99742 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.09■□□□□ 0.17
NPAS1Q99742 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.09■□□□□ 0.17
NPAS1Q99742 MIR3652-201ENST00000579335 131 ntBASIC16.09■□□□□ 0.17
NPAS1Q99742 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.09■□□□□ 0.17
NPAS1Q99742 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NPAS1Q99742 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.09■□□□□ 0.17
NPAS1Q99742 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NPAS1Q99742 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
NPAS1Q99742 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.09■□□□□ 0.17
NPAS1Q99742 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NPAS1Q99742 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.09■□□□□ 0.17
NPAS1Q99742 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.09■□□□□ 0.17
NPAS1Q99742 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NPAS1Q99742 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
NPAS1Q99742 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
NPAS1Q99742 AL355312.1-201ENST00000407115 2176 ntBASIC16.09■□□□□ 0.17
NPAS1Q99742 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NPAS1Q99742 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
NPAS1Q99742 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.08■□□□□ 0.17
NPAS1Q99742 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NPAS1Q99742 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.08■□□□□ 0.17
NPAS1Q99742 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.08■□□□□ 0.17
NPAS1Q99742 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
NPAS1Q99742 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NPAS1Q99742 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
NPAS1Q99742 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.08■□□□□ 0.17
NPAS1Q99742 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
NPAS1Q99742 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NPAS1Q99742 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NPAS1Q99742 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms