Protein–RNA interactions for Protein: Q8NHV4

NEDD1, Protein NEDD1, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1Q8NHV4 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.54■□□□□ 0.88
NEDD1Q8NHV4 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 AC073621.1-201ENST00000392730 636 ntBASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 AC098831.1-202ENST00000438821 336 ntBASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 AC092910.1-201ENST00000482027 1129 ntBASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 CD63-204ENST00000546939 779 ntTSL 3 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 AC006557.2-201ENST00000592985 1240 ntBASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 AL671883.3-201ENST00000603274 991 ntBASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 AC004706.3-202ENST00000621574 984 ntBASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 AC008764.6-201ENST00000595909 2069 ntBASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NEDD1Q8NHV4 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
NEDD1Q8NHV4 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
NEDD1Q8NHV4 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
NEDD1Q8NHV4 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.52■□□□□ 0.88
NEDD1Q8NHV4 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NEDD1Q8NHV4 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NEDD1Q8NHV4 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NEDD1Q8NHV4 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
NEDD1Q8NHV4 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
NEDD1Q8NHV4 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC20.52■□□□□ 0.88
NEDD1Q8NHV4 RPL13AP23-201ENST00000480739 586 ntBASIC20.52■□□□□ 0.88
NEDD1Q8NHV4 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.52■□□□□ 0.88
NEDD1Q8NHV4 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.52■□□□□ 0.88
NEDD1Q8NHV4 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.52■□□□□ 0.88
NEDD1Q8NHV4 AC106730.1-201ENST00000566722 1090 ntBASIC20.52■□□□□ 0.88
NEDD1Q8NHV4 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC20.52■□□□□ 0.88
NEDD1Q8NHV4 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.52■□□□□ 0.88
NEDD1Q8NHV4 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NEDD1Q8NHV4 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.52■□□□□ 0.87
NEDD1Q8NHV4 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
NEDD1Q8NHV4 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
NEDD1Q8NHV4 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 AC145285.3-201ENST00000564603 959 ntBASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 NCF1C-201ENST00000438382 1427 ntBASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NEDD1Q8NHV4 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NEDD1Q8NHV4 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.5■□□□□ 0.87
NEDD1Q8NHV4 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
NEDD1Q8NHV4 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NEDD1Q8NHV4 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
NEDD1Q8NHV4 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC20.5■□□□□ 0.87
NEDD1Q8NHV4 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NEDD1Q8NHV4 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
NEDD1Q8NHV4 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
NEDD1Q8NHV4 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NEDD1Q8NHV4 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NEDD1Q8NHV4 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC20.5■□□□□ 0.87
NEDD1Q8NHV4 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.5■□□□□ 0.87
NEDD1Q8NHV4 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms