Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
HDDC3Q8N4P3 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 SPDYE21P-201ENST00000413323 827 ntBASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 LAGE3P1-201ENST00000425356 484 ntBASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 AC073592.4-201ENST00000623827 446 ntBASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 AC009949.1-201ENST00000623048 1830 ntBASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
HDDC3Q8N4P3 AP002414.3-201ENST00000589352 1468 ntBASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 AP000997.3-201ENST00000623333 2250 ntBASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 AC002347.1-201ENST00000569543 541 ntBASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 SIGLEC16-201ENST00000599858 1437 ntBASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 AL049757.1-201ENST00000616842 1596 ntBASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 AL353593.2-201ENST00000602529 1483 ntBASIC17.69■□□□□ 0.42
HDDC3Q8N4P3 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 PRYP5-201ENST00000451909 266 ntBASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 AC134684.3-201ENST00000641758 218 ntBASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.68■□□□□ 0.42
HDDC3Q8N4P3 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms