Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC12.43□□□□□ -0.42
CKS1BP61024 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC12.43□□□□□ -0.42
CKS1BP61024 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC12.43□□□□□ -0.42
CKS1BP61024 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC12.43□□□□□ -0.42
CKS1BP61024 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
CKS1BP61024 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
CKS1BP61024 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC12.43□□□□□ -0.42
CKS1BP61024 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
CKS1BP61024 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC12.43□□□□□ -0.42
CKS1BP61024 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
CKS1BP61024 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC12.43□□□□□ -0.42
CKS1BP61024 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC12.43□□□□□ -0.42
CKS1BP61024 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
CKS1BP61024 AC083880.1-201ENST00000608266 535 ntBASIC12.43□□□□□ -0.42
CKS1BP61024 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC12.43□□□□□ -0.42
CKS1BP61024 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC12.43□□□□□ -0.42
CKS1BP61024 CICP4-201ENST00000447359 2812 ntBASIC12.43□□□□□ -0.42
CKS1BP61024 PXK-206ENST00000463280 2825 ntTSL 2 BASIC12.43□□□□□ -0.42
CKS1BP61024 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC12.42□□□□□ -0.42
CKS1BP61024 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC12.42□□□□□ -0.42
CKS1BP61024 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC12.42□□□□□ -0.42
CKS1BP61024 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
CKS1BP61024 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
CKS1BP61024 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
CKS1BP61024 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
CKS1BP61024 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC12.42□□□□□ -0.42
CKS1BP61024 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
CKS1BP61024 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC12.42□□□□□ -0.42
CKS1BP61024 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
CKS1BP61024 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
CKS1BP61024 F2R-202ENST00000505600 442 ntTSL 2 BASIC12.42□□□□□ -0.42
CKS1BP61024 PRSS44-201ENST00000515154 1146 ntBASIC12.42□□□□□ -0.42
CKS1BP61024 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC12.42□□□□□ -0.42
CKS1BP61024 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC12.42□□□□□ -0.42
CKS1BP61024 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 AC068587.9-201ENST00000641814 219 ntBASIC12.42□□□□□ -0.42
CKS1BP61024 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
CKS1BP61024 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC12.42□□□□□ -0.42
CKS1BP61024 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC12.42□□□□□ -0.42
CKS1BP61024 AC008764.6-201ENST00000595909 2069 ntBASIC12.42□□□□□ -0.42
CKS1BP61024 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
CKS1BP61024 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC12.42□□□□□ -0.42
CKS1BP61024 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC12.42□□□□□ -0.42
CKS1BP61024 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
CKS1BP61024 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 GNAS-203ENST00000306120 1878 ntBASIC12.42□□□□□ -0.42
CKS1BP61024 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
CKS1BP61024 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC12.42□□□□□ -0.42
CKS1BP61024 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CKS1BP61024 AL499627.1-201ENST00000569373 2188 ntBASIC12.42□□□□□ -0.42
CKS1BP61024 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC12.42□□□□□ -0.42
CKS1BP61024 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC12.42□□□□□ -0.42
CKS1BP61024 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC12.42□□□□□ -0.42
CKS1BP61024 NFYC-AS1-201ENST00000606277 1687 ntBASIC12.42□□□□□ -0.42
CKS1BP61024 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms