Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.82■□□□□ 0.28
COL5A1P20908 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
COL5A1P20908 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.82■□□□□ 0.28
COL5A1P20908 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
COL5A1P20908 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.82■□□□□ 0.28
COL5A1P20908 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.82■□□□□ 0.28
COL5A1P20908 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.82■□□□□ 0.28
COL5A1P20908 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.82■□□□□ 0.28
COL5A1P20908 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.82■□□□□ 0.28
COL5A1P20908 AC074386.1-202ENST00000463561 864 ntBASIC16.82■□□□□ 0.28
COL5A1P20908 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.82■□□□□ 0.28
COL5A1P20908 AC002558.1-201ENST00000488906 803 ntBASIC16.82■□□□□ 0.28
COL5A1P20908 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.82■□□□□ 0.28
COL5A1P20908 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
COL5A1P20908 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.82■□□□□ 0.28
COL5A1P20908 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
COL5A1P20908 AC025580.3-201ENST00000617932 1424 ntBASIC16.81■□□□□ 0.28
COL5A1P20908 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL5A1P20908 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL5A1P20908 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
COL5A1P20908 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL5A1P20908 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
COL5A1P20908 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL5A1P20908 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL5A1P20908 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.81■□□□□ 0.28
COL5A1P20908 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL5A1P20908 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL5A1P20908 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.81■□□□□ 0.28
COL5A1P20908 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
COL5A1P20908 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
COL5A1P20908 BICD1-207ENST00000551848 1962 ntBASIC16.81■□□□□ 0.28
COL5A1P20908 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
COL5A1P20908 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL5A1P20908 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.81■□□□□ 0.28
COL5A1P20908 MYCLP1-201ENST00000372451 1075 ntBASIC16.81■□□□□ 0.28
COL5A1P20908 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.81■□□□□ 0.28
COL5A1P20908 BCRP1-201ENST00000444246 691 ntBASIC16.81■□□□□ 0.28
COL5A1P20908 HLA-J-202ENST00000469281 1241 ntBASIC16.81■□□□□ 0.28
COL5A1P20908 CXCL1P1-201ENST00000502804 216 ntBASIC16.81■□□□□ 0.28
COL5A1P20908 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC16.81■□□□□ 0.28
COL5A1P20908 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.81■□□□□ 0.28
COL5A1P20908 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.81■□□□□ 0.28
COL5A1P20908 AC005498.2-205ENST00000593218 784 ntBASIC16.81■□□□□ 0.28
COL5A1P20908 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL5A1P20908 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.81■□□□□ 0.28
COL5A1P20908 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL5A1P20908 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL5A1P20908 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL5A1P20908 AL354751.1-201ENST00000412768 1863 ntBASIC16.81■□□□□ 0.28
COL5A1P20908 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
COL5A1P20908 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.81■□□□□ 0.28
COL5A1P20908 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL5A1P20908 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL5A1P20908 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.8■□□□□ 0.28
COL5A1P20908 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.8■□□□□ 0.28
COL5A1P20908 AC135776.1-201ENST00000319817 2481 ntBASIC16.8■□□□□ 0.28
COL5A1P20908 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
COL5A1P20908 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
COL5A1P20908 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.8■□□□□ 0.28
COL5A1P20908 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.8■□□□□ 0.28
COL5A1P20908 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.8■□□□□ 0.28
COL5A1P20908 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.8■□□□□ 0.28
COL5A1P20908 AC109322.1-201ENST00000524499 1264 ntBASIC16.8■□□□□ 0.28
COL5A1P20908 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.8■□□□□ 0.28
COL5A1P20908 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.8■□□□□ 0.28
COL5A1P20908 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.8■□□□□ 0.28
COL5A1P20908 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
COL5A1P20908 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
COL5A1P20908 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
COL5A1P20908 LINC00982-205ENST00000420957 435 ntBASIC16.8■□□□□ 0.28
COL5A1P20908 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.8■□□□□ 0.28
COL5A1P20908 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL5A1P20908 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.8■□□□□ 0.28
COL5A1P20908 AJ011932.1-201ENST00000621707 465 ntBASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms